Research Article
Whole-Genome Comparison of Representatives of All Variants of SARS-CoV-2, Including Subvariant BA.2 and the GKA Clade
Table 1
Insertion/deletion pattern and its location at the whole genome of representatives of various variants of SARS-CoV-2.
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N: no insertion/deletion; P: positive insertion/deletion; Position based on aligned sequence starting from nucleotide no. 1 of Wuhan-Hu-1; Location in the genome was based on GenBank data of Wuhan-Hu-1; Virus strains and GISAID codes WH-1 is Wuhan-Hu-1, A-1 is Alpha EPI ISL 1489174, A-2 is Alpha EPI ISL 1489173, B-1 is Beta EPI ISL 660190, B-2 is Beta EPI ISL 660613, G-1 is Gamma EPI ISL 811149, G-2 is Gamma EPI ISL 87219, D-1 is Delta EPI ISL 1544014, D-2 is Delta EPI ISL 1838642, L-1 is Lambda EPI ISL 1111127, L-2 is Lambda EPI ISL 1111341, M-1 is Mu EPI ISL 2339799, M-2 is Mu EPI ISL 2339801, O-1 is Omicron EPI ISL 9010924, O-2 is Omicron EPI ISL 9042199, BA2-1 is BA2 LSPA-3B08C6A, BA2-2 is BA2 HSLL-3B08857, GKA-1 is EPI ISL 9021856, GKA-2 is HDF-IPP08027, GH-1 is GH/490 EPI ISL 6316493, and GH-2 is GH/490 ISL 7702915. |