Predicting the Types of J-Proteins Using Clustered Amino Acids

Table 2

Scheme for reduced amino acid alphabet based on protein blocks method.

Cluster profiles	Protein blocks method
CP(13)	G-IV-FYW-A-L-M-E-QRK-P-ND-HS-T-C
CP(11)	G-IV-FYW-A-LM-EQRK-P-ND-HS-T-C
CP(9)	G-IV-FYW-ALM-EQRK-P-ND-HS-TC
CP(8)	G-IV-FYW-ALM-EQRK-P-ND-HSTC
CP(5)	G-IVFYW-ALMEQRK-P-NDHSTC