Exploring the miRNA-mRNA Regulatory Network in Clear Cell Renal Cell Carcinomas by Next-Generation Sequencing Expression Profiles

Table 1

Overview of reads analyzed across nine samples of normal control (N) and ccRCC (C) tissues.

Library	Raw sequencing reads	After adapter and quality trimming	sncRNA	miRNA
N1	14,443,742	12,906,724	8,495,200	6,252,360
N2	14,307,074	13,331,072	10,356,100	6,854,590
N3	17,936,606	15,100,756	9,130,100	3,679,540
N4	17,343,176	16,241,449	10,934,800	5,447,920
N5	14,684,860	13,072,885	9,206,400	4,592,420
N6	18,696,751	17,718,335	13,328,400	8,738,310
N7	19,096,243	17,625,538	12,940,500	7,637,660
N8	18,754,729	17,405,763	12,780,900	5,327,410
N9	18,663,047	17,516,415	13,242,400	8,099,360
C1	14,324,200	13,188,486	10,027,000	7,155,830
C2	14,931,770	13,695,844	10,906,400	7,390,700
C3	17,643,505	16,762,300	13,248,300	8,391,030
C4	15,083,510	14,082,747	10,114,800	4,218,080
C5	14,057,127	13,045,222	9,260,080	4,099,150
C6	19,244,097	18,285,475	13,897,300	8,193,160
C7	18,889,231	17,589,421	13,477,500	7,093,640
C8	19,554,654	18,365,512	13,127,700	4,896,510
C9	19,304,096	18,173,426	13,676,700	6,011,960
Average	17,053,245.4	15,783,742.8	11,563,921.1	6,337,757.2