Conformational B-Cell Epitope Prediction Method Based on Antigen Preprocessing and Mimotopes Analysis

Table 1

The detailed information of the testing dataset.

PDB_ID	Template chain	Target	Mimotope size	Reference
Antigen-antibody complex
3IU3	I	Basiliximab	6 * 9	17440057
1YY9	A	Cetuximab	4 * 12	16288119
1N8Z	C	Herceptin	5 * 12	15210798
2ADF	A	82D6A3, IgG	3 * 8	12855711
1IQD	C	Anti-coagulation factor VIII monoclonal antibody BO2C11	27 * 12	12676786
2GHW	A	80R	18 * 15	16630634
2NY7	G	B12	17 * 14, 1 * 10, 1 * 13	16940148
1G9M	G	Anti-gp120 monoclonal antibody 17b	1 * 10, 10 * 12	14596802
1E6J	P	13b5	14 * 14, 2 * 7	14596802
1ZTX	E	E16	3 * 13, 19 * 14	18760481
2AJF	A	SARS-coronavirus spike protein	18 * 15	1116480
1BJ1	W	rhuMAb	36 * 6, 3 * 5, 2 * 4	10543973
1JRH	I	A6, IgG1	59 * 5	11123892
Protein-protein
1AVZ	B	Fyn	8 * 10,10 * 12	7988556
1HX1	B	Heat shock cognate 71 kDa protein	8 * 15	7649995
2GSK	A	Protein TONB	6 * 9	16414071
3EZE	B	Protein (phosphotransferase system, HPR)	11 * 6	10048929
1II4	A	Fibroblast growth factor receptor 2	30 * 7	12032665