Conformational B-Cell Epitope Prediction Method Based on Antigen Preprocessing and Mimotopes Analysis

Table 3

The prediction performance of SVM and RF with different parameters.

Different parameters	Sen	Spe	PPV	MCC	(Sen + Spe)/2	ACC
RF
= 5, = 0, = 1	0.58	0.81	0.34	0.15	0.70	0.79	0.43
= 10, = 0, = 1	0.56	0.83	0.34	0.14	0.69	0.80	0.42
= 15, = 0, = 1	0.53	0.83	0.34	0.14	0.68	0.80	0.40
LibSVM
Blocked	0.58	0.80	0.32	0.14	0.69	0.79	0.42
Weight	0.57	0.81	0.33	0.14	0.69	0.79	0.41
Blocked and weight	0.58	0.81	0.33	0.14	0.69	0.79	0.42