Research Article

Efficient Multicriteria Protein Structure Comparison on Modern Processor Architectures

Table 3

Time required for the baseline all-to-all PSC task using the TMalign, CE, and USM PSC methods on the PC and a single core of the SCC. The table also shows the time required for the all-to-all MCPSC task (where all three PSC methods are used). All times are in seconds.

Method Ported software on PC Ported software on SCC 1 core
CK34RS119 CK34 RS119
Load Processing Load Processing Load Processing Load Processing

TMalign 0.01 127 0.05 1725 0.30 2514 1 33452
CE 0.80 374 3 6459 14 7152 50 132205
USM 0.01 0.60 0.04 7 0.70 30 2 345
All 0.80 502 3 8191 15 9697 53 166000