Differential Expression Analysis in RNA-Seq by a Naive Bayes Classifier with Local Normalization

Table 4

Ranking of 13 genes by six different methods.

Gene	edgeR	DESeq	cuffdiff	NOIseq	Gfold	GExposer
LAPTM4B	109	109	99	11	27	8
TSPAN12	59	54	18	55	98	10
TNNI2	8750	8730	41066	671	241	15861
H19	7	6	2	1	2	25
ZNF185	651	672	56286	7879	81	1008
MR1	144	141	22837	51	12	4156
ASRGL1	125	269	8560	101	10	854
C12orf59	13	11	70	4	1	2
KLK6	680	646	1568	17	36	115
ATOH8	66	70	956	224	21	99
FUT3	57	62	1583	6	5	9
KRT20	356	625	462	399	33	18
OLR1	48	42	8741	7	4	4

The numbers in bold font correspond to genes that were ranked in top 50.