A Practical and Scalable Tool to Find Overlaps between Sequences

Table 2

Data sets used in experiments.

Data set	Size	Number of strings
Generated randomly using a uniform distribution	10 MB–50 GB	10^4–66 × 10^7
First fully public female human genome (SRR098909)	32.7 G	162 M
Illumina whole human genome (SRR866986)	9.8 G	53 M
A study in rat genome (ERR125766)	5 G	97 M
Homo sapiens	1.1 G	15 M
Exome (SRR500004)
EST of C. elegans	167 MB	334,465
EST of Citrusclementina	104 MB	118,365
EST of Citrussinensis	154 MB	208,909
EST of Citrustrifoliata	46 MB	62,344
EST of Attacephalotes	278 MB	2,835