BioMed Research International / 2016 / Article / Tab 4 / Research Article
Genetic Structure and Drug Susceptibility Patterns of Mycobacterium tuberculosis Complex Strains Responsible of Human Pulmonary Tuberculosis in the Major Rearing Region in Cameroon Table 4 MTBC population structure comparison between Adamaoua and West region in Cameroon.
Spoligotype profiles SIT Lineage Strains number Adamaoua West region 523 U 2 0 □□□□□ □□□□ □Orphan AFRI_2 1 0 □ □Orphan ND 1 0 □□□□53 T1 34 46 □ □□□□ 7 T1 2 0 □ □□□□498 T1 1 0 □□ □□□□2577 T1 1 0 □ □□□□118 T2 0 9 □ □□□□119 X1 1 0 □ □□ □□□□Orphan ND 0 1 □ □□□□44 T5 0 4 □ □ □□□□1913 T5 0 2 □ □ □ □□□□Orphan ND 1 0 □□□ □□□ □□ □□□□Orphan ND 0 1 □□□□ □□□□42 LAM_9 0 2 □ □□□□ □□□□20 LAM1 4 5 □ □□□□ □□□□93 LAM_5 0 1 □ □ □□□□ □□□□17 LAM_2 0 1 □ □□□□ □□□□150 LAM_9 0 4 □ □□ □□□□ □□□□Orphan ND 0 1 □ □□□□774 T1 2 1 □□□ □□□□61 Cameroon 223 184 □ □□□ □□□□Orphan Cameroon 0 1 □□□ □□□ □□□□Orphan Cameroon 0 1 □□□□□□ □□□ □□□□Orphan Cameroon 2 0 □ □□□ □□□□Orphan Cameroon 0 1 □ □□□ □□□□115 Cameroon 2 18 □□ □ □□□ □□□□Orphan Cameroon 0 1 □□□ □ □□□ □□□□ Orphan Cameroon 0 1 □□ □ □□□ □□□□Orphan Cameroon 0 1 □ □ □□□ □□□□Orphan Cameroon 0 1 □□□□□□□□□□□□ □□ □□□ □□□□Orphan Cameroon 2 12 □□□□□□□□□□□□□□□ □□□ □□□□852 Cameroon 1 1 □□□□□□□□ □□□ □□□ □□□□Orphan Cameroon 1 4 □□ □ □□□ □□□□Orphan Cameroon 0 2 □ □□□ □□□□Orphan Cameroon 0 2 □□□□□□□□□□□□□□□□□□□ □□□□144 T1 0 1 □ □□□□516 T1 1 0 □□□ □ □□□□Orphan ND 0 1 □□□□□□ □□□□Orphan ND 0 1 □ □□□□50 H3 3 78 □□ □ □□□□655 H3 0 1 □□ □ □□□□849 H3 0 1 □ □ □□□□75 H3 0 7 □□□□□□ □□□□47 H1 11 1 □□□□□□□□□□□□□□ □□□□□□ □□□□Orphan H1 1 0 □□□□□□□ □□□□742 H3 1 0 □□□□□□□□□□□□□□□□□□Orphan U 1 0 □□□□ □□□□□□□□□□□□ □□25 CASE1_DELHI 1 1 □□□ □□□□□□□□839 U 0 4 □1338 U 1 0 □ □Orphan U 1 0 □ □□□ □□□□ □Orphan Cameroon 0 1 □ □ □□□ □□□□ □Orphan Cameroon 0 3 □□□□□□□□ □□□ □□□□ □□□□ □Orphan AFRI_3 0 1 □ □ □ □□□□ □Orphan ND 0 1 □□ □□□□ □□370 T1 1 0 □□□□□ □□□438 AFRI_3 1 1 □ □ □ □□□Orphan ND 0 1 □□□□□ □□□□ □□□331 AFRI_2 0 2 □ □□□□□ □□□□ □□□319 AFRI_2 1 1 □ □□□□□ □ □□□□ □□□860 AFRI_2 0 1 □□□□□ □ □□□□□□□ □ □□□Orphan AFRI 0 2 □ □ □□□Orphan AFRI_2 1 0 □□□□□ □□□□ □ □ □□□101 AFRI_2 4 3 □□□ □□□□□ □□□□ □ □ □□□Orphan AFRI_2 1 0 □ □□□□□ □ □□□□ □ □ □□□ Orphan AFRI_2 1 1 □□□□□ □□□□□□□□□ □□□Orphan AFRI_3 1 3 □□□□□ □ □□□□ □ □ □ □□□Orphan AFRI_2 0 1 □□□□□ □□□□□□□□□ □ □□□856 AFRI_3 1 0 □□□□ □52 T2 7 16 □ □□□□ □ 853 T2 2 17 □ □□□□ □848 T2 1 1 □□□ □□□□ □Orphan T2 3 4 □ □ □□□□ □ Orphan ND 0 1 □ □ □□□□ □2088 T2 1 0 □ □□ □□□□ □Orphan T2 1 0 □ □□□□ □117 T1 0 7 □ □ □□□□ □ Orphan ND 0 2 □□ □ □□□□ □Orphan ND 0 2 □ □□□□ □Orphan T2 1 1 □□□□□□□□□□□□□□□□□□□□□□□□ □□□□ □ 125 T2 1 0 □□□ □□□□ □403 Cameroon 6 2 □□□ □□□ □□□□ □844 Cameroon 0 1 □□□ □ □□□ □□□□ □Orphan Cameroon 0 1 □ □□□ □□□□ □Orphan Cameroon 0 2 □ □□□□ □2867 T2 3 0 □□ □□□□□□□ □□□□ □Orphan ND 0 1 □ □□□□ □317 T2 4 4 □□□□□□ □□□□ □233 T2 2 1 □ □□□□□□ □□□□ □Orphan T2 1 0 □ □□□□ □49 H3 1 8 □□□ □ □□□□ □ 307 H3 1 0 □ □ □□□□ □448 H3 0 1 □□□□□□ □□□□ □62 H1 2 0 □□□□□□□ □□□□ □316 H3 14 4 □□ □□□□□□□ □□□□ □ Orphan H1 1 0 □ □□□□□□□ □□□□ □314 H3 0 1 □□□□□□□□□□□□□□□□□□ □□□□ □Orphan H1 1 0 □□ □□□□□ □Orphan ND 0 1 □□□□□□□□□□□□□□□□□□□□□ □1204 U 3 1 □□ □□□□□□□□□□□□□□□□□□□□□ □ Orphan ND 0 1 □ □ □□□□ □□Orphan ND 0 1 □ □ □ □ □□□□ □□ Orphan ND 0 1 □□□□□□□ □□□□ □□□Orphan H1 2 0 □□□□□ □□□□ □□□□330 AFRI 0 1 □□□□□ □ □□□□ □□□□Orphan AFRI_2 0 1 □□□□□ □□□□ □ □ □□□□Orphan AFRI_2 0 1 □□□□□ □□□□□□□□□ □□□□Orphan AFRI_3 1 0 □□□ □□□□ □838 Cameroon 40 18 □ □□□ □□□□ □Orphan Cameroon 1 0 □□□□□□ □□□□ □Orphan Cameroon 1 0 □□□□□□□□□□□□□□Orphan ND 0 1 □□□ □□□□ □□□Orphan Cameroon 0 1 □□□ □□□□ □□Orphan Cameroon 0 1 □□□□□□□ □□□□ □ □□Orphan H1 1 0 □ □ □ □ □□□□□1037 BOVIS1 1 0 □ □□□□□□ □□□ □ □□□□□Orphan ND 0 1 □ □□□□□□□□□□ □ □□□□□308 BOV 1 0 □□□□□□□□□□□□□237 U likely H3 0 12 □ □ □□□□□□□□□□□□□Orphan ND 0 1 □□□□□□□□□□□□□□□□□□□46 U (likely H) 13 4 □□□ □□□□□□□□□□□□□□□□□□□Orphan U 1 0 □ □□□□□□□□□□□□□□□□□□□1656 U 0 2 □ □□□□□□□□□□□□□□□□□□□450 U 6 2 □ □ □□□□□□□□□□□□□□□□□□□Orphan U 0 1 □ □ □□□□□□□□□□□□□□□□□□□842 U 0 1 □□□□□□□□□□□□□□□□□□□□786 U 0 8 □ □□□□□□□□□□□□□□□□□□□□569 U 0 1 □□□□□□□ □□□□□□□□□□□□□□□□□□□□□Orphan U 0 1
ND = not determined.