VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity

Table 1

Software list for synteny and collinearity visualization.

Software name	Publishing year	Graphical synteny	Visualization types	Vector graphics
MCMuSeC	2009	✕	✕	✕
OrthoCluster	2009	✓	Dual bar, linear	✕
i-ADHoRe 3	2011	✓	Dotted hierarchy
FISH	2003	✕	✕	✕
ColinearScan	2006	✕	✕	✕
MCScan	2008	✕	✕	✕
CYNTENATOR	2010	✕	✕	✕
SyMAP	2011	✓	Dual bar	✕
MCScanX	2012	✓	Dotted linear circular	✕
SynChro	2014	✓	Dual bar	✕
GSV	2011	✓	Dual bar	✕
EasyFig	2011	✓	Dual bar
C-Sibelia	2013	✕	Circos-format	✕
Gbrowse-syn	2010	✓	Dual bar	✕
Kegg	2000	✓	Network	✕
Circos	2009	✓	Circular	✓
WebLogo	2004	✕	Textual	✓
VGSC	2015		Dotted linear circular