Research Article
Comparative Phenotype and Genome Analysis of Cellvibrio sp. PR1, a Xylanolytic and Agarolytic Bacterium from the Pearl River
Table 2
Genomic feature and CAZyme family of strain PR1 and six related strains.
| | | PR1 | Cellvibrio japonicus | Cellvibrio sp. BR | Cellvibrio sp. OA-2007 | Cellvibrio sp. PSBB023 | Cellvibrio mixtus |
| | Genome size (Mb) | 4.43 | 4.58 | 4.85 | 4.59 | 4.7 | 5.18 | | GC (mol%) | 47.56 | 52 | 48.8 | 47.7 | 49.4 | 46.66 | | Total genes | 3,844 | 3679 | 4144 | 4094 | 4062 | 4916 | | Predict proteins | 3,730 | 3577 | 4047 | 3872 | 3910 | 2845 | | Annotation percentage (%) | 97.0 | 97.23 | 97.66 | 94.58 | 96.26 | 57.87 | | CAZyme familya | | | | | | | | CBMs | 63 | 95 | 105 | 118 | 49 | 121 | | CEs | 20 | 24 | 33 | 24 | 21 | 27 | | GHs | 128 | 132 | 159 | 132 | 97 | 135 | | GTs | 38 | 49 | 54 | 49 | 54 | 58 | | PLs | 2 | 14 | 0 | 5 | 0 | 0 | | AAs | 0 | 0 | 3 | 6 | 3 | 9 | | Total | 251 | 314 | 354 | 334 | 224 | 350 |
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: carbohydrate-binding modules; CEs: carbohydrate esterases; GHs: glycoside hydrolases; GTs: glycosyl transferases; PLs: polysaccharide lyases; AAs: auxiliary activities.
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