Candidate Gene Identification of Feed Efficiency and Coat Color Traits in a C57BL/6J × Kunming F2 Mice Population Using Genome-Wide Association Study

Table 4

The sequence quality status of RAD-Seq data.

	High FCR	Low FCR
Raw base (10^8 bp)	18.79 ± 14.54	13.13 ± 5.76
Clean base (10^8 bp)	17.67 ± 13.81	12.28 ± 5.56
Effective rate (%)	93.62 ± 1.80	93.04 ± 1.72
Error rate (%)	0.03 ± 0.00	0.03 ± 0.00
Q20 (%)	96.88 ± 0.29	96.61 ± 0.58
Q30 (%)	91.46 ± 0.53	90.78 ± 1.36
GC content (%)	40.21 ± 0.62	40.48 ± 0.82

Effective rate (%): the percentage of clean data in raw data; error rate (%): base error rate; Q20 and Q30 (%): the percentage of base with Phred value for greater than 20 or 30; GC content (%): the percentage of G and C base.