Hospital Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Tertiary Care Hospital in Moshi, Tanzania, as Determined by Whole Genome Sequencing

Table 3

Multilocus sequence typing, antimicrobial resistance genes, and virulence genes.

Sample name	Species	MLST	Resistance genes	Virulence factors
260	S. aureus	ST-1	blaZ	splA, splB, splE, aur, hlb, lukE, lukD, seb, hlgB, hlgC, hlgA, sak, scn, se-h
449	S. aureus	ST-1	blaZ	splA, splB, splE, aur, hlb, lukE, lukD, seb, hlgB, hlgC, hlgA, sak, scn, se-h
494	S. aureus	ST-1	blaZ	splA, splB, splE, aur, hlb, lukE, lukD, seb, hlgB, hlgC, hlgA, sak, scn, se-h
437 C	S. aureus	ST-1	blaZ
577	S. aureus	ST-15	aac(6′)-aph(2′′), ant(6)-Ia, aph(3′)-III, blaZ, dfrG, erm(B), erm(C), lsa(A)-like, tet(K), tet(M)	splA, splB, splE, aur, hlb, lukE, lukD, hlgB, hlgA, hlgC, scn.
463 B	S. aureus	ST-15	blaZ, dfrG, erm(C), tet(K)	splA, splB, splE, aur, hlb, lukE, lukD, hlgB, hlgA, hlgC, scn.
196	S. aureus	ST-152	blaZ-like, dfrG, erm(C), tet(K)	aur, hlb, hlgB, hlgA, sak, scan, lukF-PV, lukS-PV, edinB
224 C	S. aureus	ST-152	blaZ-like, dfrG, tet(K)	aur, hlb, hlgB, hlgA, sak, scan, lukF-PV, lukS-PV, edinB
323 B	S. aureus	ST-152	dfrG, erm(C), tet(K)	aur, hlb, hlgB, hlgA, sak, scan, lukF-PV, lukS-PV, edinB
38	S. aureus	ST-1847	blaZ-like	nil
37 B	S. aureus	ST-1847	blaZ	splA, splB, splE, aur, hlb, sek, seq, lukE, lukD, hlgB, hlgC, hlgA, sak, scn, lukF-PV, lukS-PV, sea/sep, sen, tst.
176 A	S. aureus	ST-188	blaZ-like, tet(K)-like	splA, splB, splE, aur, hlb, lukE, lukD, hlgB, hlgA, sak, scn.
204	S. aureus	ST-22	Not found	aur, hlb, hlgB, hlgA, hlgC, sak, scan, seo, sei, sen, seg, sem, tst, seu,
201 A	S. aureus	ST-22	Not found	aur, hlb, hlgB, hlgA, hlgC, sak, scan, seo, sei, sen, seg, sem, tst, enterotoxin,
32	S. aureus	ST-239	aac(6′)-aph(2′′)-like, ant(6)-Ia-like, aph(3′)-III, erm(A), mecA-like, spc-like, tet(M)	Not found
29 B	S. aureus	ST-239	aac(6′)-aph(2′′)-like, ant(6)-Ia-like, aph(3′)-III, erm(A), mecA-like, spc-like, tet(M)	Not found
143 A	S. aureus	ST-30	blaZ	splE, aur, hlb, hlgB, hlgC, hlgA, sak, scn, lukF-PV, lukS-PV, seo, sei, seu, sen, seg, sem
567 A	S. aureus	ST-5	blaZ, dfrG, tet(K)
166	S. aureus	ST-580	blaZ	splA, splE, aur, hlb, lukE, lukD, hlgB, hlgA, hlgC, sak, scn.
159 A	S. aureus	ST-6	aadA2-like, aadB-like, blaCARB-2, blaZ, dfrA23, strA, strB, sul1, sul2, tet(31)-like, tet(G)
56	S. aureus	ST-8	aac(6′)-aph(2′′), blaZ-like, dfrG, erm(C), mecA	splA, splB, splE, aur, hlb, sek, seq, lukE, lukD, seb, hlgB, hlgC, hlgA, sak, scn.
71	S. aureus	ST-8	aac(6′)-aph(2′′), blaZ, dfrG, erm(C), mecA	splA, splB, splE, aur, hlb, sek, seq, lukE, lukD, seb, hlgB, hlgC, hlgA, sak, scn.
153 C	S. aureus	ST-8	blaZ, dfrG, tet(K)	splA, splB, splE, aur, hlb, sek, seq, lukE, lukD, seb, hlgB, hlgC, hlgA, sak, scn, sea/sep.
319 D	S. aureus	ST-8	aac(6′)-aph(2′′), blaZ-like, dfrG, erm(C), mecA	splA, splB, splE, aur, hlb, sek, seq, lukE, lukD, seb, hlgB, hlgC, hlgA, sak, scn.
348 B	S. aureus	ST-8	aac(6′)-aph(2′′), blaZ-like, dfrG, erm(C), mecA	splA, splB, splE, aur, hlb, sek, seq, lukE, lukD, seb, hlgB, hlgC, hlgA, sak, scn.
349 A	S. aureus	ST-8	aac(6′)-aph(2′′), blaZ-like, dfrG, mecA	splA, splB, splE, aur, hlb, sek, seq, lukE, lukD, seb, hlgB, hlgC, hlgA, sak, scn.
69 S	S. aureus	ST-8	aac(6′)-aph(2′′), blaZ, dfrG, erm(C), mecA	splA, splB, splE, aur, hlb, sek, seq, lukE, lukD, seb, hlgB, hlgC, hlgA, sak, scn.
59	S. aureus	ST-97	blaZ-like, tet(K)	splA, splB, splE, aur, hlb, lukE, lukD, seb, hlgB, hlgC, hlgA, sak, scn.
108	S. aureus	Unknown ST	aac(6′)-aph(2′′), blaZ-like, dfrG, erm(C), mecA-like	splA, splB, splE, aur, hlb, sek, seq, lukE, lukD, seb, hlgB, hlgC, hlgA, sak, scn, sea/sep.
309 B	S. aureus	Unknown ST	aac(6′)-aph(2′′), blaZ-like, dfrG, erm(C), mecA-like	splA, splB, splE, aur, hlb, sek, seq, lukE, lukD, seb, hlgB, hlgC, hlgA, sak, scn, sea/sep.
547	S. epidermidis	ST-59	aac(6′)-aph(2′′), blaZ, erm(C), fosA, lnu(A)-like, mecA-like, tet(K)-like	Not found
562	S. haemolyticus	ND	aac(6′)-aph(2′′), blaZ-like, dfrG, erm(C), mecA, tet(K)-like, tet(M)	Not found
564	S. haemolyticus	ND	aac(6′)-aph(2′′), blaZ, dfrG, mecA-like, mph(C), msr(A)-like	Not found