Research Article

Recurrence-Associated Multi-RNA Signature to Predict Disease-Free Survival for Ovarian Cancer Patients

Table 4

Function enrichment analysis for the genes in the coexpression network.

Termp valueGenes

KEGGHerpes simplex virus 1 infection2.14E − 05ZNF331; ZNF682; ZNF10; ZNF8; ZNF26; ZFP14; ZNF605; ZNF84; ZNF737; ZNF688; ZNF841; ZNF334; ZNF333; ZNF354 C; ZNF783; HLA-DQB1
Hedgehog signaling pathway1.02E − 02PTCH2; GLI2; CDON
Mannose type O-glycan biosynthesis2.01E − 02B3GALNT2; POMT2
Basal cell carcinoma2.24E − 02FZD1; PTCH2; GLI2
ReactomeGLI proteins bind promoters of Hh responsive genes to promote transcription_Homo sapiens_R-HSA-56358511.85E − 03PTCH2; GLI2
Signaling by Hedgehog_Homo sapiens_R-HSA-53583511.98E − 03PTCH2; IQCE; WDR35; CDON; GLI2; ADCY5
Hedgehog 'on' state_Homo sapiens_R-HSA-56326848.95E − 03PTCH2; IQCE; GLI2; CDON
Cardiac conduction_Homo sapiens_R-HSA-55768919.63E − 03KCNJ14; FKBP1B; CACNA2D2; FXYD6; ATP2A1
Activation of SMO_Homo sapiens_R-HSA-56358381.26E − 02IQCE; CDON
Ion homeostasis_Homo sapiens_R-HSA-55787751.28E − 02FKBP1B; ATP2A1; FXYD6
Ion channel transport_Homo sapiens_R-HSA-9837121.35E − 02ATP8B2; TRPV4; WNK3; FKBP1B; FXYD6; ATP2A1
ECM proteoglycans_Homo sapiens_R-HSA-30001781.56E − 02TGFB2; LRP4; ASPN
Ion transport by P-type ATPases_Homo sapiens_R-HSA-9368371.56E − 02ATP8B2; ATP2A1; FXYD6
Generic Transcription Pathway_Homo sapiens_R-HSA-2124362.42E − 02ZNF331; ZNF682; ZNF10; ARID3A; ZNF26; ZFP14; ZNF605; CENPJ; ZNF737; ZNF688; ZNF445; ZNF334; ZNF333; ZNF354 C
Adrenaline, noradrenaline inhibits insulin secretion_Homo sapiens_R-HSA-4000422.91E − 02CACNA2D2; ADCY5
Resolution of D-loop Structures through Holliday Junction Intermediates_Homo sapiens_R-HSA-56935683.73E − 02GEN1; BRCA2
Resolution of D-Loop Structures_Homo sapiens_R-HSA-56935373.95E − 02GEN1; BRCA2
Muscle contraction_Homo sapiens_R-HSA-3970144.02E − 02KCNJ14; FKBP1B; CACNA2D2; FXYD6; ATP2A1
IRS activation_Homo sapiens_R-HSA-747134.69E − 02GRB10
Hyaluronan biosynthesis and export_Homo sapiens_R-HSA-21428504.69E − 02ABCC5
Leukotriene receptors_Homo sapiens_R-HSA-3919064.69E − 02LTB4R
Scavenging by Class B Receptors_Homo sapiens_R-HSA-30004714.69E − 02SAA1
GO BPSpinal cord dorsal/ventral patterning (GO:0021513)1.33E − 03DLL4; GLI2
Regulation of DNA replication (GO:0006275)2.92E − 03CCDC88A; USP37; DBF4B; GLI2
Central nervous system projection neuron axonogenesis (GO:0021952)3.88E − 03C12ORF57; GLI2
Embryonic digestive tract development (GO:0048566)1.54E − 02TGFB2; GLI2
Dorsal/ventral pattern formation (GO:0009953)1.54E − 02DSCAML1; GLI2
Renal system development (GO:0072001)1.97E − 02TGFB2; LRP4; GLI2
Kidney development (GO:0001822)2.33E − 02TGFB2; LRP4; GLI2
Smoothened signaling pathway (GO:0007224)3.52E − 02CC2D2A; GLI2
Regulation of cytokine secretion (GO:0050707)3.73E − 02C1QTNF3; SAA1
Positive regulation of protein secretion (GO:0050714)4.52E − 02C1QTNF3; TGFB2; SAA1
Positive regulation of DNA replication (GO:0045740)4.62E − 02DBF4B; GLI2
GO MFUbiquitin-like protein-specific protease activity (GO:0019783)7.57E − 04USP37; ZRANB1; USP49; USP34; OTUD3
Thiol-dependent ubiquitin-specific protease activity (GO:0004843)8.54E − 04USP37; ZRANB1; USP49; USP34; OTUD3
Thiol-dependent ubiquitinyl hydrolase activity (GO:0036459)1.99E − 03USP37; ZRANB1; USP49; USP34; OTUD3
Oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)3.73E − 02BBOX1; TET1
Transition metal ion binding (GO:0046914)3.87E − 02ZNF331; ZNF593; ZNF84; LCN2; TET1; BBOX1; ZNF8; GLI2

KEGG, Kyoto Encyclopedia of Genes and Genomes; GO, Gene Ontology; BP, biological process; MF, molecular function.