Plastome Phylogenomic and Biogeographical Study on Thuja (Cupressaceae)

Table 2

List of genes identified in the plastomes of Thuja.

Functional groups	Group of genes	Names of genes
Protein synthesis and DNA replication	Ribosomal RNAs	rrn5, rrn4.5, rrn23, rrn16
	Transfer RNAs	trnH-GUG, trnI-CAU^+, trnK–UUU, trnQ-UUG^+, trnT-UGU, trnS-GGA, trnfM-CAU, trnG-GCC, trnS-UGA, trnT-GGU, trnE-UUC, trnY-GUA, trnD-GUC, trnC-GCA, trnR-UCU, trnG-UCC, trnS-GCU, trnL-UAA, trnF-GAA, trnN-GUU, trnR-ACG, trnA-UGC, trnI-GAU, trnV-GAC, trnL-CAA, trnW-CCA, trnP-UGG, trnV-UAC, trnM-CAU, trnL-UAG
	Small subunit	rps3, rps7, rps8, rps11, rps18, rps19, rps4, rps14, rps2, rps15, rps12
	Ribosomal proteins large subunit	rpl32, rpl23, rpl2, rpl22, rpl16, rpl14, rpl36, rpl33, rpl20
	RNA polymerase	rpoB, rpoC1, rpoC2, rpoA
Photosynthesis	Photosystem I	psaA, psaB, psaM, psaC, psaI, psaJ
	Photosystem II	psbA, psbD, psbZ, psbC, psbM, psbI, psbK, psbH, psbN, psbT, psbB, psbJ, psbL, psbF, psbE
	Cytochrome b6/f	petN, petD, petB, petA, petL, petG
	ATP synthase	atpI, atpH, atpF, atpA, atpB, atpE
	NADH dehydrogenase	ndhD, ndhE, ndhG, ndhI, ndhA, ndhH, ndhF, ndhB, ndhJ, ndhK, ndhC
	Large subunit of RuBisCO	rbcL
Miscellaneous proteins	Subunit of acetyl-CoA-carboxylase c-type cytochrome synthesis gene	accD, ccsA, cemA, clpP, infA, chlB, chlL, chlN, matK
Genes of unknown function	Hypothetical conserved coding frame	ycf3, ycf2, ycf4, ycf1

Gene containing a single intron. Gene containing two introns. ⁺Gene having two copies.