Identification of MicroRNAs in Taxillus chinensis (DC.) Danser Seeds under Cold Stress

Table 3

Key miRNAs and their targets involved in cold response and seed germination.

Function	Target	Annotation	miRNA	A1_vs._A0	A2_vs._A0	A2_vs._A1
Response to cold	c43520_g1_i1	Soluble inorganic pyrophosphatase 1, chloroplastic-like	miR4228	NC	NC	Up
	c48194_g1_i4	Phospholipase D p1-like	miR8036	Down	NC	Up
	c47711_g1_i2	Thylakoid lumenal 15 kDa protein 1, chloroplastic	aly-miR390a-3p	Up	NC	NC
	c47711_g1_i4	Hypothetical protein GLYMA_11G222100
	c47711_g1_i3	Hypothetical protein VITISV_013914
	c47711_g1_i1	Hypothetical protein GLYMA_11G222100
	c51250_g1_i1	Gibberellin receptor GID1B	zma-miR164d-5p	NC	NC	Down
Response to abiotic stimulus	c29605_g1_i1	Uncharacterized protein LOC100247992	gma-miR1520o-3p	Up	NC	Down
	c34743_g1_i3	RNA pseudouridine synthase 1-like	c53051_g1_i1_18088-5p	NC	Down	Down
	c44975_g1_i2	Uncharacterized protein LOC105644596	sly-miR10539-3p	Up	NC	Down
Embryo development ending in seed dormancy	c46765_g2_i1	ruBisCO large subunit-binding protein subunit alpha	th-miR3434-5p	NC	Up	Up
	c52633_g2_i3	ATP-dependent zinc metalloprotease FtsH	MIR5998	NC	NC	Up
Seed germination	c51250_g1_i1	Gibberellin receptor GID1B	zma-miR164d-5p	NC	NC	Down
Seed dormancy process
Mucilage extrusion from seed coat	c49078_g1_i1	Subtilisin-like protease SBT1.7	gma-miR1520o-3p	Up	NC	Down
Mucilage metabolic process involved in seed coat development
Seed coat development	c50468_g1_i1	Subtilisin-like protease SBT1.7