[Retracted] Genome Assembly and Analyses of the Macrofungus Macrocybe gigantea

Figure 2

(a) Phylogeny of Tricholomataceae generated from Bayesian analysis of ITS sequences, rooted with A. ostoyae. Bootstrap support (BS) are given at the internode bubbles (BS). We performed the maximum-likelihood (ML) analysis of ITS sequence data by Tamura 3-parameter model (T92)+Gamma Distributed (G) substitution model in MEGA5.05. The clade with a thick branch indicates the part we are interested in. Orange: Tricholoma; light coral: Macrocybe; cyan: Agaricus; khaki: Pleurotus; red: Armillaria. (b) Parameters of annotated M. gigantea genes in comparison with those of the A. ostoyae, P. eryngii, C. cinerea, C. gibba, L. nuda, T. matsutake, T. saponaceum, T. sp., T. terreum, T. flavovirens, and T. bakamatsutake. (c) Gene family cluster analysis of M. gigantea, A. ostoyae, C. cinerea, T. matsutake, and T. bakamatsutake. (d) Left panel: Gene family expansion/contraction analysis of C. cinerea, T. bakamatsutake, T. matsutake, T. flavovirens, T. sp., T. saponaceum, T. terreum, L. nuda, C. gibba, P. eryngii, A. ostoyae, and M. gigantea. Right panel: The right-bottom heat map illustrates the copy numbers of the gene coding plant cell wall degrading enzymes and pathogenicity-related gene families in the 12 species.

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