Bioinformatics Analysis of Spike Proteins of Porcine Enteric Coronaviruses

Table 2

Bioinformatics software-related information.

Name of software	URL	Function
ProtParam	https://web.expasy.org/protparam/	Analyze the physical and chemical properties of protein
ExPASy-ProtScale	https://web.expasy.org/protscale/	Analysis of protein affinity and hydrophobicity
TMHMM Server v.2.0	https://www.cbs.dtu.dk/services/TMHMM/	Transmembrane analysis of proteins
SignalP4.0	https://www.cbs.dtu.dk/services/SignaIP-4.0/	Predictive signal peptide
NetPhos 3.1 Server	https://www.cbs.dtu.dk/services/NetPhos/	Prediction of phosphorylation site
NetNGlyc4.0Serve	https://www.cbs.dtu.dk/services/NetNGlyc/	Prediction of N-type glycosylation sites
Predicting Antigenic Peptides	http://imed.med.ucm.es/Tools/antigenic.pl	Prediction of protein epitopes
SMART	http://smart.embl-heidelberg.de/	Protein domain analysis tool
PROSITE	http://prosite.expasy.org/	Prediction of functional motif
Clustal Omega	https://www.ebi.ac.uk/Tools/msa/clustalo/	Multiple sequence alignment