Genetic Diversity of Shanlan Upland Rice (Oryza sativa L.) and Association Analysis of SSR Markers Linked to Agronomic Traits

Table 3

Genetic diversity parameters of SSR loci used for genotyping in Shanlan upland rice accessions.

No.	SSR loci	Number of alleles	Observed heterozygosity	Shannon’s diversity index
1	RM583	5.0	0.1855	0.3234
2	RM490	7.0	0.1378	0.2304
3	RM443	4.0	0.3115	0.4827
4	RM493	8.0	0.1032	0.1793
5	RM424	6.0	0.1270	0.2177
6	RM423	5.0	0.1999	0.3399
7	RM561	7.0	0.2134	0.3524
8	RM208	11.0	0.0847	0.1554
9	RM71	5.0	0.1629	0.2699
10	RM231	7.0	0.2015	0.3357
11	RM571	6.0	0.2269	0.3582
12	RM8277	6.0	0.1683	0.2887
13	RM85	4.0	0.1884	0.3094
14	RM567	9.0	0.1461	0.2425
15	RM551	10.0	0.1409	0.2473
16	RM471	3.0	0.2688	0.4192
17	RM274	2.0	0.2948	0.4573
18	RM267	5.0	0.1944	0.3270
19	RM190	5.0	0.1845	0.2956
20	RM253	5.0	0.1584	0.2498
21	RM432	4.0	0.2004	0.3204
22	RM481	19.0	0.0655	0.1352
23	RM336	13.0	0.0797	0.1608
24	RM331	7.0	0.1889	0.3235
25	RM72	5.0	0.1867	0.3151
26	RM316	10.0	0.2073	0.3366
27	OSR28	8.0	0.1231	0.2174
28	RM278	6.0	0.2505	0.3817
29	RM219	7.0	0.1322	0.2273
30	RM590	5.0	0.1482	0.2430
31	RM332	6.0	0.1448	0.2467
32	RM21	10.0	0.0935	0.1681
33	RM7102	5.0	0.1644	0.2708
34	RM3331	8.0	0.1191	0.2088
35	RM17	6.0	0.1540	0.2550
Mean		6.8	0.1702	0.2826