Research Article

Development of Rapid and Visual Nucleic Acid Detection Methods towards Four Serotypes of Human Adenovirus Species B Based on RPA-LF Test

Table 1

The designed primers and probes for RPA and PCR.

UsageTypeIDSequence (5-3)

RPA-HAdVForward primerHAdV-UniFACATCGCCGGACAGGATGCTTCGGAGTACC
Reverse primerHAdV-UniR3/7Biotin-GGCCATGTCAAGCACTCTGTTGTCGCCTAC
Reverse primerHAdV-UniR21/55Biotin-GGCCATATCCAGCACTCTGTTGTCGCCCAC
ProbeHAdV-UniP3/7FAM-GGTCTGGTGCAGTTCGCCCGTGCAACAGAC-[THF]-CCTACTTCAGTATGG-PO4
ProbeHAdV-UniP21/55FAM-GGTCTGGTGCAGTTCGCCCGCGCCACAGAC-[THF]-CCTACTTCAATCTGG-PO4
RPA-HAdV3Forward primerHAdV3-F1ACCGGGAAGACAATACCTACTCTTACAAAG
Forward primerHAdV3-F2ACGCTGGCTGTAGGCGACAACAGAGTGCTT
Forward primerHAdV3-F3GCCATATTCCGGCACAGCTTACAATTCACT
Reverse primerHAdV3-R1Biotin-TTCTTCTCCAACTTGAGGCTCTGGCTGATA
Reverse primerHAdV3-R2Biotin-TTGTCTCCCTTCATGGAAGCAATGCCAAAT
Reverse primerHAdV3-R3Biotin-GTAGCATGGCTTCATGTTGGTAGCTGGTTT
ProbeHAdV3-ProbeFAM-ATAGTTACAACGAATCGAGACAATGCAGTA-[THF]-CTACCACCACAAACA-PO4
RPA-HAdV7Forward primerHAdV7-F1TGACCACCGACCGTAGCCAGCGACTGATGC
Forward primerHAdV7-F2GCCATATTCCGGCACAGCTTACAATTCACT
Forward primerHAdV7-F3ATACATACTCTTACAAGTGCGGTACACCC
Reverse primerHAdV7-R1Biotin-TTCTTCTCCAACTTGAGGCTCTGGCTGATA
Reverse primerHAdV7-R2Biotin-TTCAACATCTCCTTCGGTTGGTGTTACTTT
Reverse primerHAdV7-R3Biotin-CTACAAAGTTATCCCTGAAGCCAATGTAAT
ProbeHAdV7-ProbeFAM-TCTCAGTGGATAGTTACAACGGGAGAAGAC-[THF]-ATGCCACCACATACA-PO4
RPA-HAdV21Forward primerHAdV21-F1TTTGTGCCCGTTGACCGGGAAGACAATACC
Forward primerHAdV21-F2AATACCTACGCATACAAAGTTCGATACACC
Forward primerHAdV21-F3ATACAAAGTTCGATACACCTTGGCTGTGGG
Reverse primerHAdV21-R1Biotin-TGCATAAATTGGTTTGGCTTCGCCGTCTGT
Reverse primerHAdV21-R2Biotin-TCCCACCTGAGGTTCTGGTTGGTATAGTTT
Reverse primerHAdV21-R3Biotin-GCTCTACCACCATACTTCTCAGTTGTTCCA
ProbeHAdV21-ProbeFAM-AGTGGATTGCTGAAGGCGTAAAAAAAGAAG-[THF]-TGGGGGATCTGACGA-PO4
RPA-HAdV55Forward primerHAdV55-F1GCTCCTAAAGGCGCTCCAAATACATCTCAG
Forward primerHAdV55-F2TCAAACCCTATTCTGGTACGGCTTACAACT
Forward primerHAdV55-F3CCGTTGACCGGGAGGACAATACATACTCTT
Reverse primerHAdV55-R1Biotin-CGACTTTCTGATTTGGCTGCTCCGTTGTTT
Reverse primerHAdV55-R2Biotin-CCATCAAGGTCAGTCCAAGTTTCATCTCCC
Reverse primerHAdV55-R3Biotin-AACTTTCAAACCTATTGGGAGTCCTTCTTT
ProbeHAdV55-ProbeFAM-CGCGTAACAGAAGAGGAAAACAATACTACT-[THF]-CTTACACTTTTGGCA-PO4
PCR for HAdV 3 (2835 bp)Forward primerHexon3-FCGAGGCTGAGTTGCTTTCA
Reverse primerHexon3-RTCGGACGATGGCTTTGAG
PCR for HAdV 7 (2814 bp)Forward primerHexon7-FCGAGGCTGAGTTGCTTTCA
Reverse primerHexon7-RTCGGACGATGGCTTTGAG
PCR for HAdV 55 (2847 bp)Forward primerHexon55-FCGACGCTGAGTTACTTTCA
Reverse primerHexon55-RTTGGACAATGGCTCTGAG
Quantitative PCRForward primerqPCR-FATGGCCACCCCATCGAT
Reverse primerqPCR-RACTCAGGTACTCCGAAGCATCCT
ProbeqPCR-PFAM-TGGGCATACATGCACATCGCCG-BHQ1