SSR Loci Analysis in Transcriptome and Molecular Marker Development in Polygonatum sibiricum

Table 3

Polymorphism analysis of 154 EST-SSRs in 10 Polygonatum Mill. germplasm resources.

Loci	Na	I	PIC	He	Loci	Na	I	PIC	He	Loci	Na	I	PIC	He
p2	6	0.5662	0.669	0.749	p164	4	0.6047	0.501	0.616	p319	5	0.5385	0.604	0.7
p6	4	0.6897	0.42	0.489	p171	5	0.6247	0.65	0.739	p323	5	0.6208	0.63	0.714
p7	6	0.5662	0.709	0.784	p172	5	0.6619	0.588	0.662	p324	4	0.6619	0.476	0.574
p10	3	0.4571	0.371	0.464	p173	5	0.6619	0.588	0.662	p326	6	0.6619	0.656	0.732
p17	4	0.5004	0.326	0.363	p175	5	0.6208	0.618	0.7	p334	6	0.6047	0.728	0.805
p21	5	0.6247	0.643	0.732	p178	7	0.5385	0.723	0.791	p336	6	0.5662	0.709	0.784
p22	8	0.4649	0.791	0.853	p180	5	0.5662	0.618	0.708	p341	4	0.673	0.483	0.575
p24	7	0.6208	0.703	0.766	p182	4	0.6926	0.354	0.399	p344	5	0.5385	0.604	0.7
p28	7	0.5385	0.732	0.801	p187	3	0.6845	0.24	0.275	p345	5	0.6619	0.653	0.742
p30	7	0.5004	0.769	0.835	p190	4	0.6929	0.45	0.529	p350	5	0.6247	0.586	0.68
p31	5	0.6897	0.46	0.511	p191	5	0.6816	0.544	0.616	p351	3	0.6926	0.215	0.242
p35	7	0.5385	0.732	0.801	p195	5	0.673	0.428	0.472	p352	7	0.3612	0.797	0.875
p36	6	0.6594	0.656	0.732	p200	5	0.6619	0.562	0.645	p353	6	0.6816	0.65	0.721
p40	6	0.4649	0.709	0.784	p204	4	0.5385	0.52	0.626	p355	6	0.6926	0.683	0.763
p42	5	0.5385	0.65	0.739	p209	4	0.673	0.394	0.455	p357	6	0.5444	0.687	0.765
p45	5	0.6888	0.544	0.616	p210	5	0.6926	0.512	0.576	p360	5	0.5956	0.643	0.732
p46	4	0.5444	0.525	0.642	p214	3	0.6047	0.272	0.318	p361	6	0.6926	0.669	0.749
p57	6	0.5385	0.728	0.805	p215	6	0.6247	0.65	0.721	p364	7	0.5385	0.769	0.835
p61	4	0.6208	0.501	0.616	p220	5	0.6888	0.562	0.645	p365	3	0.4571	0.163	0.177
p63	7	0.673	0.753	0.818	p221	6	0.6619	0.579	0.637	p368	5	0.6845	0.544	0.616
p65	9	0.6247	0.849	0.905	p225	5	0.6247	0.63	0.714	p370	6	0.6452	0.579	0.637
p66	8	0.673	0.81	0.87	p228	6	0.642	0.656	0.732	p371	6	0.6247	0.709	0.784
p71	7	0.5004	0.769	0.835	p231	4	0.6047	0.394	0.455	p374	6	0.5385	0.709	0.784
p72	8	0.673	0.775	0.835	p236	3	0.673	0.272	0.318	p389	5	0.6047	0.618	0.7
p79	8	0.3612	0.81	0.87	p239	5	0.6208	0.643	0.732	p393	8	0.5662	0.835	0.908
p82	9	0.673	0.849	0.905	p241	4	0.5662	0.494	0.61	p394	6	0.673	0.687	0.765
p85	4	0.6926	0.42	0.489	p242	6	0.6888	0.65	0.721	p404	6	0.6047	0.669	0.749
p90	4	0.642	0.394	0.455	p246	4	0.673	0.484	0.593	p405	6	0.6208	0.709	0.784
p108	3	0.5716	0.314	0.378	p247	5	0.6929	0.587	0.67	p411	7	0.5444	0.753	0.818
p109	4	0.6926	0.452	0.541	p248	3	0.5385	0.272	0.318	p416	7	0.6929	0.788	0.853
p111	4	0.5956	0.394	0.455	p256	3	0.6845	0.24	0.275	p420	8	0.6926	0.81	0.87
p113	4	0.6929	0.476	0.574	p260	5	0.6926	0.512	0.576	p421	6	0.5956	0.669	0.749
p116	4	0.673	0.484	0.593	p262	7	0.6047	0.703	0.766	p425	6	0.673	0.746	0.818
p117	5	0.6929	0.562	0.645	p264	5	0.5716	0.653	0.742	p427	8	0.6888	0.81	0.87
p118	7	0.3406	0.753	0.818	p266	5	0.4491	0.672	0.765	p434	6	0.5444	0.752	0.826
p120	5	0.6619	0.562	0.645	p268	5	0.5004	0.653	0.742	p440	8	0.6047	0.727	0.784
p122	6	0.4571	0.737	0.817	p269	4	0.6619	0.484	0.593	p442	5	0.6247	0.59	0.679
p123	4	0.6929	0.484	0.593	p272	5	0.6619	0.562	0.645	p444	6	0.673	0.615	0.68
p125	4	0.6926	0.525	0.642	p274	6	0.6888	0.615	0.68	p448	7	0.6926	0.642	0.697
p127	5	0.5444	0.586	0.68	p278	7	0.4649	0.769	0.835	p452	9	0.6926	0.849	0.905
p129	5	0.6247	0.63	0.714	p282	5	0.5385	0.586	0.68	p463	5	0.673	0.643	0.732
p130	3	0.642	0.194	0.216	p286	3	0.6845	0.24	0.275	p464	5	0.673	0.643	0.732
p132	3	0.673	0.314	0.378	p287	7	0.5385	0.77	0.843	p469	9	0.6247	0.831	0.887
p135	5	0.6816	0.58	0.66	p288	6	0.6619	0.615	0.68	p471	8	0.673	0.81	0.87
p136	4	0.6619	0.484	0.593	p290	5	0.5385	0.643	0.732	p476	7	0.6845	0.753	0.818
p140	4	0.6897	0.452	0.541	p295	7	0.4571	0.778	0.847	p477	9	0.673	0.849	0.905
p149	4	0.6816	0.452	0.541	p298	9	0.6594	0.797	0.853	p483	9	0.673	0.831	0.887
p153	5	0.6208	0.59	0.679	p300	6	0.6594	0.62	0.686	p489	8	0.5004	0.775	0.835
p157	3	0.6816	0.215	0.242	p301	3	0.6208	0.272	0.318	p492	7	0.673	0.807	0.87
p158	5	0.673	0.643	0.732	p309	7	0.6816	0.788	0.853	p499	8	0.6888	0.81	0.87
p161	3	0.6208	0.272	0.318	p315	5	0.4649	0.692	0.803	Sum	845	95.121	92.474	103.79
p163	5	0.6619	0.674	0.763	p316	5	0.6897	0.512	0.576	Mean	5.4870	0.6177	0.6005	0.6740

Na: observed number of alleles; I: Shannon Information Index; PIC: Polymorphism Information Content; He: expected heterozygosity.