RNA-Seq-Based Breast Cancer Subtypes Classification Using Machine Learning Approaches

Table 4

The confusion matrix of the classification results corresponding to Table 3, where “” represents a certain subtype (e.g., Basal-like) and “N” represents the remaining four subtypes (e.g., Her2, LumA, LumB, and Normal-like). The columns of the confusion matrix represent the reference (i.e., true) class labels, and the rows represent the prediction class labels.

Subtypes	Nb			rf			svmRadial
Basal-like	Pred\Ref	P	N	Pred\Ref	P	N	Pred\Ref	P	N
	P	74	15	P	73	3	P	74	10
	N	2	342	N	3	354	N	2	347
Her2	Pred\Ref	P	N	Pred\Ref	P	N	Pred\Ref	P	N
	P	29	46	P	25	16	P	28	19
	N	3	355	N	7	385	N	4	382
LumA	Pred\Ref	P	N	Pred\Ref	P	N	Pred\Ref	P	N
	P	204	38	P	195	24	P	204	32
	N	21	170	N	30	184	N	21	176
LumB	Pred\Ref	P	N	Pred\Ref	P	N	Pred\Ref	P	N
	P	69	57	P	67	25	P	45	16
	N	13	294	N	15	326	N	37	335
Normal-like	Pred\Ref	P	N	Pred\Ref	P	N	Pred\Ref	P	N
	P	356	3	P	397	4	P	411	8
	N	62	13	N	21	12	N	7	8