Sequence Fusion Algorithm of Tumor Gene Sequencing and Alignment Based on Machine Learning

Table 4

Comparison of parameters of four variation detection tools.

Soft	System	Input	Output	Identifies
GATK	Lin	SAM/BAM	VCF	SNP, InDel
BCFtools	Lin	SAM/BAM	VCF	SNP, InDel
FreeBayes	Lin	SAM/BAM	VCF	SNP, InDel
VarScan 2	Lin, Mac, Win	Mpileup	VCF, CSV	SNP, InDel, CNV