Human Genomic Deletions Generated by SVA-Associated Events

Table 1

Characterization of the SVA recombination-associated deletion loci.

Locus	Genomic position (hg19)	Deletion size (bp)	Deletion mechanism^a	Microhomology (bp)
87	chr1: 35413213–35414369	1017	NHEJ	4
273	chr1: 181923989–181924621	682	NHEJ	0
361	chr1: 249205332–249205990	4980	NHEJ	5
432	chr2: 44288699–44288879	277	NHEJ	7
574	chr2: 184655950–184658043	113	NHEJ	2
689	chr3: 42024110–42025361	4463	NHEJ	2
1505	chr7: 55378897–55379920	1271	NHEJ	0
1652	chr8: 11186832–11188441	305	NHEJ	3
2299	chr11: 3418351–3419320	367	NHEJ	2
2335	chr11: 46606606–46606899	526	NHEJ	2
2493	chr12: 18672855–18672949	589	NAHR	36
2836	chr15: 20408545–20409855	312	NHEJ	4
2981	chr16: 30170002–30170483	850	NHEJ	1

^aNHEJ: nonhomologous end joining, NAHR: nonallelic homologous recombination.