Research Article

The Use of Genomics in Conservation Management of the Endangered Visayan Warty Pig (Sus cebifrons)

Table 3

Assessment of shared and island-specific variation. The vast majority of the SNPs, both coding and noncoding, are shared between islands, and only a very small portion may be specific. Note that this pertains a total of 4679012 SNPs, excluding fixed differences between S. scrofa and S. cebifrons, for which the minor allele count is at least two out of seven individuals, or 14 haplotypes.

 SharedPanay ()Negros ()

All (4679012 SNPs total)3969361457741251910
Synonymous1956521501190
Nonsynonymous tolerated10081918533
Nonsynonymous not-tolerated3370343171