Lncident: A Tool for Rapid Identification of Long Noncoding RNAs Utilizing Sequence Intrinsic Composition and Open Reading Frame Information

Table 4

Running time on human dataset.

Tools	Running time
	Stand-alone	Web server
CPC	5 days 4 h 37 min 43 s	About 1 day
CPAT	16 s
CNCI	37 min 53 s
PLEK	3 min 04 s
Lncident	3 min 01 s	About 12 min

Test on Intel® Core™ i7-2600 CPU at 3.40 GHz and 8 GB RAM.
The test dataset contains 4,000 mRNAs and 4,000 lncRNAs. is hard to calculate precise running time of testing on web server; thus, we can only obtain a rough approximation. We omitted the result of CPAT web server, because only file size less than 10 MB is allowed, and when we split our file, we found the average error is too serious to accept.