Research Article
Genome-Wide Characterization of RNA Editing Sites in Primary Gastric Adenocarcinoma through RNA-seq Data Analysis
Table 4
List of editing sites that affect microRNA target recognition.
| | Chr. | Position | Gene | Specify | Affected microRNA(s) |
| | chr1 | 9100841 | GPR157 | Common | miR-490-3p | | chr1 | 10459831 | DFFA | Common | miR-150/5127 | | chr1 | 10460010 | DFFA | Common | miR-208ab/208ab-3p | | chr1 | 10460010 | DFFA | Common | miR-499-5p | | chr1 | 179073347 | FAM20B | Common | miR-125a-5p/125b-5p/351/670/4319 | | chr1 | 179073347 | FAM20B | Common | let-7/98/4458/4500 | | chr1 | 179075081 | FAM20B | Normal | miR-22/22-3p | | chr1 | 179075107 | FAM20B | Normal | miR-146 ac/146b-5p | | chr1 | 179075144 | FAM20B | Normal | miR-143/1721/4770 | | chr4 | 2839669 | SH3BP2 | Cancer | miR-199ab-5p | | chr4 | 2840078 | SH3BP2 | Common | miR-217 | | chr4 | 2840078 | SH3BP2 | Common | miR-200bc/429/548a | | chr4 | 2938644 | NOP14 | Common | miR-24/24ab/24-3p | | chr4 | 17626928 | MED28 | Normal | miR-455-5p | | chr4 | 17632277 | FAM184B | Cancer | miR-144 | | chr5 | 34906645 | RAD1 | Common | miR-143/1721/4770 | | chr5 | 37290314 | NUP155 | Common | miR-24/24ab/24-3p | | chr5 | 43377383 | CCL28 | Normal | miR-383 | | chr5 | 43380635 | CCL28 | Common | miR-24/24ab/24-3p | | chr5 | 75378054 | COL4A3BP | Cancer | miR-103a/107/107ab | | chr6 | 53100576 | FBXO9 | Normal | miR-103a/107/107ab | | chr7 | 44802500 | PPIA | Common | miR-22/22-3p | | chr7 | 100212870 | CASTOR3 | Common | miR-128/128ab | | chr7 | 100212870 | CASTOR3 | Common | miR-27abc/27a-3p | | chr8 | 41542121 | GINS4 | Common | miR-26ab/1297/4465 | | chr8 | 43029279 | HOOK3 | Common | miR-26ab/1297/4465 | | chr8 | 43029280 | HOOK3 | Cancer | miR-26ab/1297/4465 | | chr9 | 128305442 | TRUB2 | Common | miR-15abc/16/16abc/195/322/424/497/1907 | | chr9 | 128305442 | TRUB2 | Common | miR-103a/107/107ab | | chr11 | 768850 | GATD1 | Common | miR-141/200a | | chr11 | 769393 | GATD1 | Cancer | miR-24/24ab/24-3p | | chr11 | 111728428 | SIK2 | Normal | miR-142-3p | | chr14 | 21460342 | RAB2B | Common | miR-196abc | | chr16 | 66887684 | PDP2 | Common | miR-7/7ab | | chr19 | 1032835 | CNN2 | Common | miR-25/32/92abc/363/363-3p/367 | | chr19 | 1777958 | ONECUT3 | Common | miR-142-3p | | chr19 | 1778139 | ONECUT3 | Common | miR-194 | | chr19 | 1778241 | ONECUT3 | Common | miR-218/218a | | chr19 | 1778303 | ONECUT3 | Common | miR-103a/107/107ab | | chr19 | 2835224 | ZNF554 | Normal | miR-17/20ab/20b-5p/93/106ab/427/518a-3p/519d | | chr19 | 4653661 | TNFAIP8L1 | Common | miR-150/5127 | | chr19 | 16631220 | SMIM7 | Cancer | miR-192/215 | | chr19 | 18368012 | PGPEP1 | Common | miR-455-5p | | chr20 | 3869487 | MAVS | Normal | miR-338/338-3p |
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