In Silico Study of Mercury Resistance Genes Extracted from Pseudomonas spp. Involved in Bioremediation: Understanding the Promoter Regions and Regulatory Elements
Table 4
List of matching candidates for EXPREG transcription factor (TF).
SN
Candidate of TF
Strains showed motif sequence binding
GC (%)
Regulatory roles
Statistical significance
Activation (%)
Repression (%)
Dual (%)
Not specified (%)
1.
CRP
Y. pestis
46.88
0
100
0
0
2.11+00
2.
PhhR_
P. putida
46.67
90
10
0
0
2.29+00
3.
VqsM_
P. aeruginosa
59.33
7
0
0
92
3.43+00
4.
CodY
B. anthracis
20.41
0
0
0
100
3.99+00
5.
Fur
P. syringae
40.25
0
13
0
85
4.88+00
6.
EspR
M. tuberculosis
52.83
0
0
0
100
5.95+00
7.
MatP
E. coli
47.23
0
0
0
100
6.75+00
8.
CcpA
C. difficile
26.32
9
36
0
53
6.87+00
9.
GlxR
C. glutamicum
46.55
0
100
0
0
7.38+00
10.
Lrp
E. coli
40.00
1
1
0
97
7.91+00
11.
CtrA
C. crescentus
28.95
0
0
20
80
9.29+00
CRP: cAMP receptor protein; PhhR: phenylalanine hydroxylase regulator; VqsM: virulence and QS modulator; Fur: Ferric uptake regulation protein; CcpA: Catabolite control protein A; MatP: membrane-associated transfer protein; LrP: leucine-responsive regulatory protein.
