In Silico Study of Mercury Resistance Genes Extracted from Pseudomonas spp. Involved in Bioremediation: Understanding the Promoter Regions and Regulatory Elements
Table 5
List of match candidates of EXPREG transcription Confirmation Factor (TCF).
SN
Candidate TF
Strains that show motif sequence binding
GC (%)
TF confirmation mode
Not specified (%)
Statistical significance
Monomer (%)
Dimer (%)
Tetramer (%)
Other (%)
1.
CRP
Y. pestis
46.88
0
0
0
0
100
2.11+00
2.
PhhR
P. putida
46.67
0
100
0
0
0
2.29+00
3.
VqsM
P. aeruginosa
59.33
0
0
0
0
100
3.43+00
4.
CodY
B. anthracis
20.41
0
0
0
0
100
3.99+00
5.
Fur
P. syringae
40.25
0
100
0
0
0
4.88+00
6.
EspR
M .tuberculosis
52.83
0
100
0
0
0
5.95+00
7.
MatP
E. coli
4723
0
100
0
0
0
6.75+00
8.
CcpA
C. difficile
26.32
0
0
0
0
100
6.87+00
9.
GlxR
C. glutamicum
46.55
0
0
0
0
100
7.38+00
10.
Lrp
E. coli
40.00
0
96
0
3
7.91+00
11.
CtrA
C. crescentus
28.95
0
0
0
0
100
9.29+00
CRP: cAMP receptor protein; PhhR: phenylalanine hydroxylase regulator; VqsM: virulence and QS modulator; Fur: Ferric uptake regulation protein; CcpA: Catabolite control protein A; MatP: membrane-associated transfer protein; LrP: leucine-responsive regulatory protein.
