Research Article
Pangenome Analysis of Helicobacter pylori Isolates from Selected Areas of Africa Indicated Diverse Antibiotic Resistance and Virulence Genes
Table 3
Correlation coefficients of the genomic features of the strains.
| | Contigs | Size | GC content | Contig L50 | Contig N50 | tRNA | rRNA | CDS | Coarse consistency | Fine consistency | CheckM contamination | CheckM completeness |
| | Contigs | 1 | -0.1 | 0.5 | 0.7 | -0.5 | -0.1 | 0 | 0.1 | -0.3 | 0 | 0.1 | -0.3 | | Size | -0.1 | 1 | -0.1 | -0.5 | 0.3 | 0.1 | -0.2 | 0.6 | 0.2 | -0.1 | 0.2 | 0.5 | | GC content | 0.5 | -0.1 | 1 | 0.4 | -0.5 | -0.2 | 0 | 0.1 | 0 | -0.1 | 0.1 | 0.1 | | Contig L50 | 0.7 | -0.5 | 0.4 | 1 | -0.7 | -0.2 | 0.1 | -0.3 | -0.3 | 0.2 | -0.1 | -0.4 | | Contig N50 | -0.5 | 0.3 | -0.5 | -0.7 | 1 | 0.1 | -0.2 | 0.1 | 0.1 | -0.1 | 0 | 0.2 | | tRNA | -0.1 | 0.1 | -0.2 | -0.2 | 0.1 | 1 | -0.1 | 0 | -0.2 | -0.2 | 0.1 | 0 | | rRNA | 0 | -0.2 | 0 | 0.1 | -0.2 | -0.1 | 1 | -0.2 | 0.1 | 0.2 | -0.1 | -0.1 | | CDS | 0.1 | 0.6 | 0.1 | -0.3 | 0.1 | 0 | -0.2 | 1 | 0.2 | -0.7 | 0.8 | 0.5 | | Coarse consistency | -0.3 | 0.2 | 0 | -0.3 | 0.1 | -0.2 | 0.1 | 0.2 | 1 | 0.1 | 0.1 | 0.6 | | Fine consistency | 0 | -0.1 | -0.1 | 0.2 | -0.1 | -0.2 | 0.2 | -0.7 | 0.1 | 1 | -0.9 | -0.2 | | CheckM contamination | 0.1 | 0.2 | 0.1 | -0.1 | 0 | 0.1 | -0.1 | 0.8 | 0.1 | -0.9 | 1 | 0.3 | | CheckM completeness | -0.3 | 0.5 | 0.1 | -0.4 | 0.2 | 0 | -0.1 | 0.5 | 0.6 | -0.2 | 0.3 | 1 |
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