Complete Genome Sequence and Comparative Genome Analysis of Variovorax sp. Strains PAMC28711, PAMC26660, and PAMC28562 and Trehalose Metabolic Pathways in Antarctica Isolates
Table 1
Genomic information and comparative data on trehalose metabolic pathways of 19 strains of Variovorax, including our three strains PAMC26660, PAMC28562, and PAMC28711, which are denoted by red asterisk.
Strains
Variovorax sp.
Variovorax paradoxus
Variovorax boronicumulans
PAMC 26660∗
RKNM 96
38R
WDL1
RA8
PBS-H4
PBL-H6
PMC 12
PDNC 026
SRS 16
PBL-E5
PAMC 28562∗
PAMC 28711∗
5C-2
CSUSB
EPS
B4
VAI-C
J1
Genome information
Size (Mb)
7.39
7.17
6.87
8.36
7.42
6.65
6.87
7.02
7.11
7.67
7.09
4.69
4.32
7.29
5.57
6.55
7.15
9.44
7.14
GC%
66.00
66.70
67.50
66.38
66.84
66.80
66.24
67.62
67.57
66.52
66.68
63.70
66.00
67.30
65.70
66.50
67.14
69.06
68.00
CDS
6801
6592
6290
7862
6904
6186
6386
6458
6481
7281
6799
4298
4071
6653
5138
5981
6678
8568
6443
Genes
6919
6700
6405
8177
7151
6333
6595
6582
6613
7534
7012
4402
4232
6811
5236
6097
6831
8763
6727
tRNAs
52
58
51
119
74
50
95
57
56
97
95
47
46
52
52
57
48
52
51
Trehalose metabolism genes
Synthesis
otsA
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
otsB
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
treY
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
X
treZ
X
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
X
treS
X
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
√
X
Degradation
treH
GH15
GH15
GH15
GH15
GH15
GH15
GH15
GH15
GH15
X
X
X
GH15
GH15
GH15
GH15
GH15
GH15
GH15
X
GH37
X
X
GH37
GH37
GH37
X
GH37
GH37
GH37
GH37
GH37
X
X
X
X
X
X
treP
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
treT
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
√: present reference to dbCAN, Prokka anotation, and GenBank locus tag. GH15: availability reference to glycoside hydrolase 15 (GH15) family. GH37: availability reference to glycoside hydrolase 37 (GH37) family. X: not present.
