Complete Genome Sequence and Comparative Genome Analysis of Variovorax sp. Strains PAMC28711, PAMC26660, and PAMC28562 and Trehalose Metabolic Pathways in Antarctica Isolates

Table 3

Comparative analysis of the number of putative genes for the six CAZyme categories in the selected complete genomes of Variovorax strains.

Species	GH^a	GT^b	PL^c	CE^d	CBM^e	AA^f	Total
Variovorax sp. 38R	34	45	0	4	12	0	95
Variovorax sp. PAMC28711	23	30	0	3	6	2	64
Variovorax sp. PAMC26660	27	43	0	4	10	0	84
Variovorax sp. PAMC28562	27	50	0	3	11	0	91
Variovorax sp. PBL-E5	26	52	0	3	9	0	90
Variovorax sp. PBL-H6	34	44	0	3	9	0	90
Variovorax sp. PBS-H4	33	44	0	4	9	0	90
Variovorax sp. PDNC026	32	41	0	3	13	0	89
Variovorax sp. PMC12	34	42	0	4	13	0	93
Variovorax sp. RA8	29	53	0	4	9	0	95
Variovorax sp. RKNM96	31	50	0	4	13	0	98
Variovorax sp. SRS16	29	48	0	4	9	0	90
Variovorax sp. WDL1	41	53	0	3	9	0	106
Variovorax paradoxus 5C-2	34	38	0	4	13	1	90
Variovorax paradoxus CSUSB	35	36	1	3	12	0	87
Variovorax paradoxus VAI-C	36	46	0	7	13	0	102
Variovorax paradoxus B4	31	47	0	5	10	0	93
Variovorax paradoxus EPS	31	46	1	3	11	0	92
Variovorax boronicumulans J1	23	37	0	4	10	0	74

^aGH: glycoside hydrolases; ^bGT: glycosyl transferase; ^cPL: polysaccharide lyases. ^dCE: carbohydrate esterases; ^eCBM: carbohydrate-binding modules; ^fAA: auxiliary activities.