Analysis of Amino Acid Changes in the Fusion Protein of Virulent Newcastle Disease Virus from Vaccinated Poultry in Nigerian Isolates

Table 3

Percentage nucleotide identity between study isolates, traditional vaccine strains, and some isolates reported from West Africa.

NDV isolate	Nucleotide homology (%)
	OK491971	OK491972	OK491973	OK491974	OK491975	OK491976	OK491977
KU665482.1 LaSota.71.IR/2016	81.58	81.70	81.50	81.44	81.44	81.26	81.20
KT445901.1 Avian orthoavulavirus1strain Komarov	82.10	82.22	82.04	81.86	81.86	81.74	81.65
JF950509.1 Newcastle disease virus strain Mukteswar	83.02	83.14	83.35	83.29	83.17	82.87	82.99
JN872154.1 Avian orthoavulavirus 1 isolate Beaudette C	82.14	82.26	82.18	81.99	81.99	81.81	81.75
JN872151.1 Avian orthoavulavirus 1 isolate Hitchner	81.82	81.94	81.74	81.68	81.68	81.50	81.44
JX316216.1 Newcastle disease virus strain R2B	82.43	82.56	82.50	82.20	82.20	82.08	82.17
EU289028.1 Newcastle disease virus strain VG/GA	81.56	81.68	81.44	81.38	81.38	81.20	81.14
JN872152.1 Avian orthoavulavirus 1 isolate Ulster	84.14	84.39	84.21	84.27	84.03	83.97	83.67
KC987036.1 Newcastle disease virus strain F	81.77	82.02	81.74	81.56	81.68	81.44	81.47
KU058680.1 NDV/Duck/Nigeria/903/KUDU-113/1992	90.78	91.14	91.08	91.14	91.02	91.02	90.78
HF969167.1 NDV/Turkey/Nigeria/N IE 10-082/2011	91.51	91.87	91.69	91.75	91.87	91.57	91.40
HF969143.1 NDV/Chicken/Nigeria/NIE 09-1597/2009	95.79	96.15	95.97	95.91	96.03	95.85	95.55
FJ772449.1 NDV/Avian-913-33Nigeria-2006	88.76	89.00	88.86	88.80	88.67	88.80	88.49
JX390609.1 NDV/Chicken/Togo/A KO18/2009	88.49	88.73	88.55	88.61	88.49	88.55	88.19
HF969175.1 NDV/Chicken/Nigeria/NIE 10-306/2011	88.34	88.58	88.37	88.31	88.31	88.25	88.03
JF966385.1 NDV 2008_Mali_ML007_08	88.76	89.00	88.86	88.80	88.67	88.80	88.49
MT543153.1 NDV/Chicken/Niger/89/2019	98.43	98.68	98.31	98.68	98.68	98.13	98.13

Values calculated from the complete F-gene sequences. Align sequence nucleotide blast showing homology of appropriate % query cover on NCBI blastn suite.