| Marker | Rationale | #scoring |
| AMACAR | Candidate clear cell type marker | (neg), , | ARID1A | Candidate clear cell type marker | (pos), (neg), | Hnf1beta | Candidate clear cell type marker | (neg), , | Napsin A | Candidate clear cell type marker | (neg), , | p16 | Candidate serous type marker | (neg or patchy), , | ER | Hormone responsiveness | Percentage positive nuclear staining: (<10% staining), (≥10% staining); also | PR | Hormone responsiveness | Percentage positive nuclear staining: (<10% staining), (≥10% staining) | PAX8 | Müllerian (paramesonephric) lineage marker | , , | PAX2 | Primary inactivation mechanism | (pos), (neg), | p53 | Primary mutation mechanism | , , strong (mutated) expression | PTEN | Primary mutation mechanism | (pos), (neg), | GATA3 | Wolffian (mesonephric) lineage marker | (neg), , |
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