Effect of Different Polymerized Xylooligosaccharides on the Metabolic Pathway in Bifidobacterium adolescentis

Table 1

DEGs involved in the related ABC transporter during the growth of B. adolescentis on X5 compared to X2/X3 assessed by RNA-seq.

Gene no.^a	Log2 (Fc)^b	P value	FDR	Symbol	Annotation^c	Linear FMPK value^d
						X2/X3	X5
BAD_RS02255	3.01↑	0	0	yurO	Sugar ABC transporter substrate-binding protein	989.28	7940.17
BAD_RS07415	2.79↑	4.47E − 86	1.40E − 84	mdxE	ABC transporter, solute-binding protein	51.88	360.4
BAD_RS07410	2.75↑	2.30E − 19	1.78E − 18	amyD	ABC transporter permease	16.53	111.24
BAD_RS02265	2.57↑	0	0	yurM	Thiamine ABC transporter ATP-binding protein	514.59	3056.15
BAD_RS02260	2.57↑	0	0	malF	Sugar ABC transporter permease	466	2759.99
BAD_RS01495	2.51↑	2.51E − 261	2.23E − 259	TP_0034	ABC transporter substrate-binding protein	319.83	1819.21
BAD_RS00805	2.17↑	0	0	yurO	Solute-binding protein of ABC transporter system	618.73	2790.2
BAD_RS04685	1.87↑	0.0072	0.0164	-	ABC transporter permease	6.84	25.03
BAD_RS00385	1.75↑	0.0119	0.0254	livF	ABC-type branched-chain amino acid transport systems ATPase component	5.2	17.55
BAD_RS00390	1.74↑	0.0012	0.0031	BR1785	Branched-chain amino acid ABC transporter substrate-binding protein	6.05	20.15
BAD_RS00815	1.58↑	3.35E − 73	8.39E − 72	araQ	Sugar ABC transporter permease	326.41	974.92
BAD_RS07050	1.56↑	0	0	lipO	ABC transporter	3361.71	9912.7
BAD_RS00810	1.53↑	2.70E − 62	5.55E − 61	yurN	Sugar ABC transporter permease	278.86	804.48
BAD_RS08280	1.51↑	3.55E − 100	1.18E − 98	msmF	Sugar ABC transporter permease	491.14	1401.37
BAD_RS08285	1.51↑	7.82E − 193	4.82E − 191	ugpB	ABC transporter, solute-binding protein	686.94	1954.61
BAD_RS04090	1.51↑	0.0008	0.0022	TM_0352	Macrolide ABC transporter ATP-binding protein	15.42	43.86
BAD_RS00495	1.46↑	1.94E − 31	2.32E − 30	MT1311	Multidrug ABC transporter ATP-binding protein	81.69	225.1
BAD_RS01005	1.39↑	0.0242	0.0478	fbpC	ABC transporter ATP-binding protein	6.07	15.95
BAD_RS08340	1.36↑	1.22E − 07	4.99E − 07	msmE	Sugar ABC transporter substrate-binding protein	27.59	70.62
BAD_RS00990	1.31↑	0.0009	0.0024	-	ABC transporter substrate-binding protein	13.91	34.5
BAD_RS03710	1.30↑	9.00E − 05	0.0002	lolD	ABC transporter ATP-binding protein	26.53	65.31
BAD_RS08210	1.27↑	1.50E − 107	5.58E − 106	amyD	Permease of ABC transporter possibly for oligosaccharides	933.34	2256.42
BAD_RS00520	1.27↑	4.19E − 18	3.02E − 17	Tpd	Amino acid ABC transporter substrate-binding protein	173.12	416.3
BAD_RS02545	1.25↑	0.0080	0.0178	gsiC	ABC transporter permease	11.65	27.77
BAD_RS03325	1.22↑	2.33E − 10	1.15E − 09	MJ1508	ABC transporter ATP-binding protein	85.46	198.92
BAD_RS06680	1.17↑	2.10E − 26	2.13E − 25	yxeM	Amino acid ABC transporter substrate-binding protein	228.62	513.46
BAD_RS06685	1.15↑	3.29E − 17	2.29E − 16	tcyL	ABC transporter permease	196.97	437.68
BAD_RS08205	1.15↑	2.91E − 56	5.54E − 55	amyC	Sugar ABC transporter permease	603.5	1334.63
BAD_RS08275	1.13↑	1.22E − 40	1.82E − 39	amyC	ABC transporter permease	413.73	903.85
BAD_RS03705	1.11↑	5.91E − 06	1.98E − 05	-	ABC transporter permease	35.95	77.6
BAD_RS00340	1.10↑	1.30E − 31	1.61E − 30	Pip	ABC transporter	109.76	235.38
BAD_RS06690	1.03↑	2.25E − 05	7.07E − 05	patM	ABC transporter permease	65.13	133.26
BAD_RS02355	1.35↓	5.99E − 14	3.50E − 13	braC	Solute-binding protein of ABC transporter for branched-chain amino acids	171.31	67.28
BAD_RS05605	1.53↓	4.01E − 12	2.20E − 11	-	Sugar ABC transporter substrate-binding protein	247.02	85.73
BAD_RS03210	2.07↓	1.34E − 44	2.10E − 43	lolD	Peptide ABC transporter ATP-binding protein	496.58	118.13
BAD_RS03215	2.76↓	4.00E − 186	2.37E − 184	macB	ABC transporter permease	480.91	71.17
BAD_RS05655	2.93↓	8.53E − 06	2.81E − 05	bceA	ABC transporter ATP-binding protein	31.99	4.2

^aGene number referenced as B. adolescentis being alphabet and a five-digit number. ^bSignificance of fold change data is judged by having a P value of no more than 0.01. ^cGene annotations were blasted against Swiss-Prot. ^dFPKM (fragments per kilobase of exon per million fragments mapped) values for cultures on media with X2/X3 or X5 treatment.