Research Article
Effect of Different Polymerized Xylooligosaccharides on the Metabolic Pathway in Bifidobacterium adolescentis
Table 2
DEGs involved in related carbohydrate metabolism in the KEGG pathway during the growth of B. adolescentis on X5 compared to X2/X3 assessed by RNA-seq.
| | Gene no. | Log2 (Fc) | value | FDR | Symbol | Annotation | Linear FMPK value | KEGG pathway | | X2/X3 | X5 |
| | BAD_RS06400 | 1.04↑ | 4.00E − 05 | 0.0001 | bgaB | Beta-galactosidase | 19.79 | 40.65 | ko00052 | | BAD_RS07395 | 1.07↑ | 1.12E − 18 | 8.34E − 18 | bgaB | Beta-galactosidase I | 84.64 | 177.96 | ko00052 | | BAD_RS07400 | 2.10↑ | 7.31E − 18 | 5.21E − 17 | BGAL16 | Beta-galactosidase | 13.06 | 56.17 | ko00052/ko00600/ko00511 | | BAD_RS08195 | 1.78↑ | 0 | 0 | malL | Alpha-amylase | 733.05 | 2512.17 | ko00500/ko00052 | | BAD_RS08270 | 1.36↑ | 1.8E − 148 | 9.3E − 147 | malL | Alpha-amylase | 493.04 | 1264.3 | ko00500/ko00052 | | BAD_RS08325 | 1.62↑ | 1.75E − 23 | 1.54E − 22 | lacZ | Beta-galactosidase | 25.2 | 77.45 | ko00052/ko00600/ko00511 | | BAD_RS08455 | 1.04↑ | 3.10E − 35 | 4.07E − 34 | lacZ | Beta-galactosidase | 126.46 | 259.45 | ko00052/ko00600/ko00511 | | BAD_RS02270 | 2.22↑ | 5.69E − 247 | 4.56E − 245 | xynB | Beta-xylosidase | 251.3 | 1174.15 | ko01100/ko00500/ko00520 | | BAD_RS06360 | 1.08↑ | 2.76E − 56 | 5.32E − 55 | xynB | Glycoside hydrolase 43 family protein | 362.57 | 764.37 | ko01100/ko00500/ko00520 | | BAD_RS06365 | 1.52↑ | 2.76E − 123 | 1.23E − 121 | exgA | Beta-glucosidase | 475.02 | 1358.67 | ko00500 | | BAD_RS07575 | 1.18↓ | 1.84E − 112 | 7.20E − 111 | glgE | Alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase | 1093.58 | 481.27 | ko01100/ko00500/ | | BAD_RS08405 | 1.03↑ | 4.88E − 06 | 1.64E − 05 | bglB | Glycosyl hydrolase | 21.72 | 44.24 | ko01100/ko01110/ko00500/ko00460 | | BAD_RS08480 | 1.11↑ | 2.43E − 18 | 1.79E − 17 | bglB | Beta-glucosidase | 66.25 | 142.54 | ko01100/ko01110/ko00500/ko00460 | | BAD_RS05480 | 1.31↑ | 4.84E − 08 | 2.04E − 07 | BAD_1030 | Mannan endo-1,4-beta-mannosidase | 13.79 | 34.24 | ko00051 | | BAD_RS01580 | 1.05↑ | 6.05E − 12 | 3.28E − 11 | murB | UDP-N-acetylenolpyruvoylglucosamine reductase | 93.71 | 194.42 | ko01100/ko00520/ko00550 | | BAD_RS07445 | 1.38↑ | 5.29E − 30 | 6.09E − 29 | ulaF | L-ribulose-5-phosphate 4-epimerase | 229.09 | 594.72 | ko01100/ko00040 | | BAD_RS01040 | 2.09↑ | 6.41E − 24 | 5.84E − 23 | Gnd | 6-Phosphogluconate dehydrogenase | 45.07 | 192.09 | ko01100/ko01110/ko01130/ko01120/ko01200/ko00480 | | BAD_RS01050 | 3.46↑ | 2.25E − 23 | 1.97E − 22 | Idnk | Shikimate kinase | 15.68 | 172.02 | ko01100/ko01110/ko01130/ko01120/ko01200/ko00030 | | BAD_RS02150 | 1.69↑ | 0 | 0 | fucO | Lactaldehyde reductase | 1795.21 | 5803.32 | ko01120/ko00630/ko00640 |
|
|
