Research Article

[Retracted] Machine Learning-Based Ensemble Model for Zika Virus T-Cell Epitope Prediction

Table 2

Physicochemical properties used in the current study.

Sr. no.Property namePackageFunction nameNotation

1Aliphatic indexPeptidesaIndex (seq)F1
2Potential protein interaction indexPeptidesBoman (seq)F2
3Instability index of a protein sequencePeptidesinstaIndex (seq)F3
4Probability of detection of a peptidePeptiderPpeptide (x, libscheme, N)F4
5Hydrophobic moment
(1) Protein rotational angle a-helix = 100
(2) Protein rotational angle b-sheet = 160
Peptideshmoment (seq, angle)F5_1, F5_2
6Molecular weight
(1) Monoisotopic = false
(2) Monoisotopic = true
PeptidesMw (seq, monoisotopic)F6_1, F6_2
7Theoretical net charge at 9 pKa scalesPeptideschargeF7
8Hydrophobicity indexPeptidesHydrophobicityF8
9Isoelectric pointPeptidespIF9
10Kidera factorsPeptideskideraFactorsF10
11Amino acid compositionPeptidesaaCompF11