Research Article
[Retracted] Machine Learning-Based Ensemble Model for Zika Virus T-Cell Epitope Prediction
Table 2
Physicochemical properties used in the current study.
| Sr. no. | Property name | Package | Function name | Notation |
| 1 | Aliphatic index | Peptides | aIndex (seq) | F1 | 2 | Potential protein interaction index | Peptides | Boman (seq) | F2 | 3 | Instability index of a protein sequence | Peptides | instaIndex (seq) | F3 | 4 | Probability of detection of a peptide | Peptider | Ppeptide (x, libscheme, N) | F4 | 5 | Hydrophobic moment (1) Protein rotational angle a-helix = 100 (2) Protein rotational angle b-sheet = 160 | Peptides | hmoment (seq, angle) | F5_1, F5_2 | 6 | Molecular weight (1) Monoisotopic = false (2) Monoisotopic = true | Peptides | Mw (seq, monoisotopic) | F6_1, F6_2 | 7 | Theoretical net charge at 9 pKa scales | Peptides | charge | F7 | 8 | Hydrophobicity index | Peptides | Hydrophobicity | F8 | 9 | Isoelectric point | Peptides | pI | F9 | 10 | Kidera factors | Peptides | kideraFactors | F10 | 11 | Amino acid composition | Peptides | aaComp | F11 |
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