Research Article
Epidemiological and Genetic Analysis of Foot-and-Mouth Disease Virus O/ME-SA/Ind-2001 in China between 2017 and 2021
Table 2
The homology comparisons of nucleotides and amino acids between O/ME-SA/Ind-2001 FMDV strains and the MF461724 strain.
| | Strains | 5′UTR | L (12) | P1 | P2 | P3 | ORF (103) | 3′UTR | Genome | | VP4 (3) | VP2 (7) | VP3 (10) | VP1 (9) | 2A (0) | 2B (3) | 2C (16) | 3A (10) | 3B (4) | 3C (3) | 3D (26) |
| | 2018053 | 96.9 | 96.7 | 97.3 | 97.2 | 97.3 | 97.0 | 93.8 | 97.6 | 97.2 | 98.0 | 99.5 | 97.7 | 98.0 | 97.5 | 97.3 | 97.5 | | (98.0) | (98.8) | (98.6) | (99.5) | (98.1) | (100.0) | (98.7) | (99.4) | (98.0) | (100.0) | (100.0) | (98.3) | (98.8) | | |
| | 2018075 | 97.2 | 97.5 | 96.9 | 97.1 | 96.8 | 98.1 | 93.8 | 97.4 | 97.3 | 98.5 | 99.5 | 97.2 | 97.9 | 97.6 | 96.2 | 97.6 | | (97.5) | (98.8) | (98.6) | (99.5) | (99.1) | (100.0) | (98.7) | (98.4) | (98.7) | (100.0) | (99.5) | (98.3) | (98.8) | | |
| | 2018084 | 96.0 | 96.5 | 97.6 | 96.5 | 96.8 | 97.2 | 93.8 | 97.4 | 96.5 | 97.6 | 99.1 | 96.7 | 97.9 | 97.2 | 97.3 | 97.1 | | (98.0) | (98.8) | (98.6) | (99.5) | (99.1) | (100.0) | (98.7) | (99.1) | (98.0) | (100.0) | (100.0) | (97.7) | (98.8) | | |
| | 2018088 | 96.3 | 96.2 | 96.9 | 96.6 | 96.8 | 96.1 | 93.8 | 97.4 | 97.0 | 97.8 | 99.1 | 97.2 | 97.5 | 97.0 | 97.2 | 97.0 | | (97.5) | (98.8) | (99.1) | (99.5) | (98.1) | (100.0) | (98.7) | (99.1) | (98.7) | (100.0) | (100.0) | (98.1) | (98.8) | | |
| | 2019012 | 95.7 | 95.9 | 96.9 | 96.5 | 95.6 | 96.7 | 91.7 | 97.4 | 96.8 | 98.0 | 98.6 | 97.5 | 97.4 | 96.9 | 97.1 | 96.9 | | (97.5) | (98.8) | (98.6) | (99.5) | (98.6) | (100.0) | (98.7) | (98.7) | (98.7) | (100.0) | (100.0) | (97.7) | (98.7) | | |
| | 2019017 | 96.0 | 96.0 | 96.5 | 96.5 | 96.4 | 96.9 | 93.8 | 97.2 | 96.5 | 97.6 | 99.5 | 97.2 | 97.4 | 97.0 | 96.4 | 97.0 | | (97.5) | (96.5) | (99.1) | (99.1) | (98.6) | (100.0) | (98.7) | (98.4) | (98.7) | (100.0) | (100.0) | (97.2) | (98.5) | | |
| | 2020001 | 93.7 | 96.5 | 95.7 | 95.7 | 95.6 | 95.9 | 91.7 | 97.0 | 95.7 | 95.9 | 96.2 | 97.5 | 95.7 | 96.2 | 97.2 | 96.0 | | (97.5) | (100.0) | (99.1) | (98.2) | (99.1) | (100.0) | (98.1) | (97.5) | (97.4) | (95.8) | (99.1) | (98.1) | (98.2) | | |
| | 2021 007 | 93.9 | 96.4 | 95.7 | 95.9 | 95.9 | 96.1 | 91.7 | 97.8 | 95.3 | 96.1 | 96.7 | 97.7 | 95.7 | 96.2 | 97.2 | 96.0 | | (97.5) | (100.0) | (99.1) | (98.6) | (99.1) | (100.0) | (98.1) | (96.9) | (97.4) | (95.8) | (99.1) | (97.7) | (98.1) | | |
| | 2021120 | 93.7 | 95.2 | 96.1 | 95.4 | 95.0 | 95.1 | 93.8 | 97.4 | 95.1 | 95.9 | 96.2 | 97.8 | 95.7 | 95.9 | 97.3 | 95.7 | | (95.5) | (100.0) | (98.2) | (96.4) | (97.7) | (100.0) | (98.1) | (96.9) | (97.4) | (94.4) | (99.1) | (97.7) | (97.5) | | |
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Note. Nucleotide identity (%) (amino identity (%)); () represents the number of total nonsynonymous substitutions distributed in each gene.
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