Research Article
Analyzing the Evolution and Host Adaptation of the Rabies Virus from the Perspective of Codon Usage Bias
Table 2
The most preferred codon of RABV for each amino acid and isoacceptor tRNAs in its hosts.
| | AA | Most preferred codons in RABV | tRNA Isotypes in hosts | | Myotis lucifugus | Mustela putorius furo | Canis familiaris | Homo sapiens |
| | Ala | GCA | AGC (8/12) | AGC (15/28) | AGC (13/27) | AGC (26/38) | | Arg | AGA | ACG (6/23) | CCT (7/29) | CCT (7/25) | ACG (7/28) | | Asn | AAC | GTT (9/9) | GTT (11/11) | GTT (14/14) | GTT (25/25) | | Asp | GAC | GCT (7/7) | GTC (7/7) | GTC (11/11) | GTC (13/13) | | Cys | UGU | ACA (27/27) | GCA (25/25) | GCA (19/19) | GCA (29/29) | | Gln | CAG | CTG (6/9) | CTG (7/11) | CTG (10/14) | CTG (13/19) | | Glu | GAG | CTC (6/11) | TTC (7/13) | TTC (9/16) | CTC, TTC (8/16) | | Gly | GGG | GCC (8/17) | GCC (9/15) | GCC (11/26) | GCC (14/28) | | His | CAU | GTG (6/6) | GTG (6/6) | GTG (8/8) | GTG (9/9) | | Ile | AUC | AAT (7/9) | AAT (10/15) | AAT (8/13) | AAT (15/23) | | Leu | UUG | CAG (5/15) | AAG, CAA (6/24) | CAG (6/21) | AAG, CAG (9/31) | | Lys | AAG | CTT (12/15) | CTT (37/48) | CTT (38/48) | CTT (15/27) | | Phe | UUC | GAA (5/5) | GAA (11/11) | GAA (10/10) | GAA (10/10) | | Pro | CCU | AGG (6/13) | AGG (9/16) | AGG (8/17) | AGG (9/20) | | Ser | UCU | AGA (6/15) | GCT (10/25) | AGA (10/25) | AGA (9/25) | | Thr | ACC | AGT, TGT (5/13) | AGT (10/20) | AGT (8/15) | AGT (9/20) | | Tyr | UAU | GTA (5/5) | GTA (9/9) | GTA (8/8) | GTA (13/13) | | Val | GUG | AAC (5/11) | AAC (8/21) | CAC (8/19) | CAC (13/27) |
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Note: most abundant isoacceptor tRNAs in its hosts matching the most preferred codons of RABV are marked in bold.
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