Research Article
Novel Recombinant Rabbit Hemorrhagic Disease Virus 2 (RHDV2) is Circulating in China within 12 Months after Original RHDV2 Arrival
Table 1
Results of the recombination analysis for novel RHDV2 strains using RDP software.
| | Strains (collect province) | Most likely donor strain | Break pointc | Methods and average p-values | | NSPa | SPb | RDP | GENECONV | BootScan | MaxChi | Chimaera | 3Seq |
| | SC2020/1016-02 (Sichuan) | JS-NATF2 (unclassified genotype) | SC2020/0401 (GI.2) | 5,301 (5,251–5,420) | 6.606 × 10−111 | 1.502 × 10−101 | 4.241 × 10−114 | 2.361 × 10−4 0 | 1.230 × 10−28 | 4.170 × 10−48 | | SC2020/1025 (Sichuan) | 5,301 (5,248–5,405) | 1.607 × 10−103 | 9.300 × 10−98 | 3.104 × 10−107 | 2.620 × 10−39 | 1.351 × 10−27 | 1.142 × 10−49 | | JS2021/0125 (Jiangsu) | 5,301 (5,248–5,405) | 6.049 × 10−107 | 9.419 × 10−100 | 8.189 × 10−108 | 4.020 × 10−4 0 | 1.026 × 10−28 | 2.962 × 10−50 | | GX2021/0421 (Guangxi) | 5,301 (5,251–5,420) | 4.508 × 10−106 | 2.647 × 10−98 | 2.202 × 10−109 | 1.228 × 10−39 | 9.931 × 10−28 | 5.187 × 10−48 |
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Notes: aNonstructural proteins. bStructural proteins. c99% confidence interval is indicated.
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