Research Article
Genomic and Virulence Investigations of a Novel Porcine Deltacoronavirus Strain Identified in South Korea
Table 2
Comparison of the complete genomes of the PDCoV isolates to the South Korean prototype strain KNU14-04.
| | Genome region (nucleotide length) | KNU-1607 | GNU-2105 | | % identity (no. of nt or aa differences) to KNU14-04 |
| | 5′-UTR (593) | 100 (0) | 99.8 (1) | | ORF1ab (18,803) | 99.9 (6) | 99.7 (18) | | nsp2 (1,779) | 99.8 (1) | 99.7 (2) | | nsp3 (4,209) | 99.9 (2) | 99.5 (7) | | nsp4 (1,536) | 99.8 (1) | 99.6 (2) | | nsp5 (921) | 100 (0) | 99.7 (1) | | nsp6 (831) | 100 (0) | 99.6 (1) | | nsp7 (288) | 99.0 (1) | 100 (0) | | nsp8 (567) | 100 (0) | 100 (0) | | nsp9 (327) | 99.0 (1) | 100 (0) | | nsp10 (399) | 100 (0) | 100 (0) | | nsp11 (21) | 86.7 (1) | 100 (0) | | nsp12 (2,787) | 100 (0) | 99.9 (1) | | nsp13 (1,788) | 100 (0) | 99.8 (1) | | nsp14 (1,551) | 100 (0) | 99.8 (1) | | nsp15 (981) | 100 (0) | 99.4 (2) | | nsp16 (837) | 100 (0) | 100 (0) | | S (3,483) | 99.3 (8) | 99.2 (9) | | E (252) | 100 (0) | 100 (0) | | M (654) | 100 (0) | 100 (0) | | NS6 (285) | 100 (0) | 98.9 (1) | | N (1,029) | 100 (0) | 99.7 (1) | | NS7 (603) | 98.5 (3) | 97.5 (5) | | NS7a (303) | 99.0 (1) | 97.0 (3) | | 3´-UTR (392) | 99.5 (2) | 98.0 (8) | | Total | 99.8 (0/20/0)a | 99.4 (1/35/8)a |
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Note. aThe number of individual differences in the 5′-UTR, protein-coding region, and 3′-UTR, respectively.
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