Genomic and Virulence Investigations of a Novel Porcine Deltacoronavirus Strain Identified in South Korea
Table 3
Pairwise comparisons of the full-length genomes and the S protein genes of the GNU-2105 and global PDCoV strains.
Strain
Nucleotide/amino acid identity (%) (No. of nucleotide/amino acid differences)
GNU-2105
Minnesota 454
Iowa 136
HKD
Peru isolate
HKU15-155
HB
GX 1468B
NT1 1215
VN 0116
BTL 0115
GNU-2105/ KOR/2021
99.5 (131)
99.3 (165)
99.0 (248)
99.4 (153)
98.9 (288)
99.0 (257)
97.3 (688)
96.9 (782)
97.9 (546)
97.2 (705)
Minnesota 454/ USA/2014
99.2 (9)
99.8 (49)
99.4 (141)
99.5 (123)
99.2 (202)
99.3 (172)
97.5 (630)
97.1 (724)
98.1 (481)
97.4 (650)
Iowa 136/ USA/2015
99.1 (11)
99.7 (4)
99.3 (166)
99.4 (148)
99.1 (229)
99.2 (199)
97.4 (655)
97.1 (746)
98.0 (504)
97.4 (670)
HKD/ Japan/2016
98.4 (18)
98.9 (13)
98.9 (13)
99.1 (234)
98.8 (312)
98.9 (285)
97.1 (732)
96.8 (822)
97.7 (589)
97.0 (751)
Peru isolate/ Peru/2019
98.8 (14)
99.1 (11)
98.9 (13)
98.1 (22)
98.8 (303)
99.0 (264)
97.3 (694)
96.9 (792)
97.8 (552)
97.2 (717)
HKU15-155/ China/2012
98.2 (21)
98.8 (14)
98.8 (14)
98.2 (21)
98.2 (21)
99.5 (124)
97.7 (592)
97.3 (682)
98.1 (494)
97.6 (608)
HB/ China/2015
98.6 (16)
99.2 (9)
99.3 (8)
98.4 (18)
98.4 (18)
99.2 (9)
97.7 (574)
97.3 (679)
98.1 (478)
97.6 (603)
GX 1468B/ China/2018
97.4 (30)
98.0 (23)
98.0 (23)
97.4 (30)
97.5 (29)
97.6 (28)
98.0 (23)
98.0 (514)
98.6 (361)
98.3 (431)
NT1 1215/ Thailand/2015
96.7 (38)
97.3 (31)
97.3 (31)
96.6 (40)
96.7 (38)
97.2 (32)
97.5 (29)
97.4 (30)
98.1 (473)
99.4 (164)
VN 0116/ Vietnam/2015
98.7 (15)
99.1 (10)
99.1 (10)
98.4 (19)
98.5 (17)
98.4 (18)
98.7 (15)
97.8 (25)
97.2 (33)
98.4 (395)
BTL 0115/ Laos/2016
97.2 (33)
97.8 (26)
97.8 (26)
97.0 (35)
97.3 (31)
97.5 (29)
97.9 (24)
97.7 (27)
99.1 (10)
97.4 (30)
Note. The percent full-length genome identities (nucleotide level) were shown in the upper right, and the percent S gene identities (amino acid level) were presented in the lower left.
