| | Pathogen | Host scientific name | Country | Occurrence rate (no. pos./total no.) | Detection method | Locus | Species/genotype (n) | Subgenotype (n) | Reference |
| | Domestic carnivore | | Giardia duodenalis | Canis lupus familiaris | Italy | 15 (17/113) | CM, PCR | ssu-rRNA | A (2), C (11), D (1), A + C (2), C + D (1) | – | Berrilli et al. [54] | | | Italy | 100 (21/21) | PCR | ssu-rRNA, gdh, bg | A (6), C (1), D (13), A + D (1) | A13 (5), A83 (1), D13 (7), D23 (4), D1 + D23 (2) | Lalle et al. [55] | | | Italy | 19 (20/101) | CM, PCR | tpi | A (3), C (17) | A13 (3), C13 (13), C23 (4) | Papini et al. [56] | | | Italy | 21 (26/127) | CM, PCR | ssu-rRNA | A (8), C (14), D (4) | – | Scaramozzino et al. [57] | | | Italy | 64 (9/14) | CM, PCR | bg | A (9) | A13 (9) | Marangi et al. [58] | | | Italy | 58 (165/285) | CM, PCR | ssu-rRNA, bg | B (1), C (49), D (29) | B13 (1) | Simonato et al. [59] | | | Italy | 29 (204/705) | CM, PCR | ssu-rRNA, bg | B (1), C (9), D (11) | NA | Simonato et al. [60] | | | Italy | 21 (56/262) | CM, PCR | ssu-rRNA | C (6), D (19) | – | Liberato et al. [61] | | | Italy | 41 (69/168) | CM, PCR | ssu-rRNA, bg, tpi | A (16), B (6), C (2), A + B (1) | AII (5) | Agresti et al [62] | | | The Netherlands | 100 (2/2) | PCR1 | ssu-rRNA, gdh | D (2) | – | van der Giessen et al. [42] | | | The Netherlands | 15 (14/92) | CM, PCR | ssu-rRNA | A (1), C (7), D (3), C + D (1) | – | Overgaauw et al. [63] | | | The Netherlands | 86 (493/573) | CM, PCR | ssu-rRNA | NA | – | Uiterwijk et al. [64] | | | Hungary | 59 (110/187) | CM, PCR | ssu-rRNA | C (5), D (9), C + D (1) | – | Szénási et al. [65] | | | Germany | 100 (92/92) | PCR1 | ssu-rRNA | C (33), D (50), C + D (8), A + D (1) | – | Barutzki et al. [66] | | | Germany | 92 (55/60) | CM, PCR | ssu-rRNA, gdh | A (33), C (5), D (2), A + C (15) | AI (14) | Leonhard et al. [67] | | | Germany | 6 (5/81) | PCR | gdh | A (5) | NA | Sotiriadou et al. [68] | | | Germany | 95 (123/130) | CM, PCR | ssu-rRNA, gdh, bg | A (24), B (8), C (52), D (69), F (6) | A13 (3), A23 (1), A53 (4), A1/A53 (2), BIII (3) | Pallant et al. [69] | | | Germany | 42 (13/31) | CM, PCR | ssu-rRNA, gdh, bg, tpi | A (2), C (1), D (2), A + B (1) | AI (2) | Rehbein et al. [70] | | | Germany | 31 (115/376) | CM, PCR | ssu-rRNA, gdh, tpi, tpi-D2 | A (2), C (42), D (52), E (2), F (2) | NA | Sommer et al. [71] | | | Germany | 29 (112/386) | CM, PCR | ssu-rRNA, gdh, bg | A (9), C (43), D (40), C + D (5), D + A (4), C + A (3) | AI (9) | Murnik et al. [72] | | | Belgium | 23 (270/1159) | CM, PCR | bg | A (40), B (4), C (26), D (49) | A23 (2), A33 (36), D13 (16), D23 (25) | Claerebout et al. [73] | | | United Kingdom | 10 (87/878) | CM, PCR | ssu-rRNA, bg | A (1), C (10), D (29), C + D (1) | A33 (1), D13 (2), D23 (8) | Upjohn et al. [74] | | | Poland | 2 (3/148) | CM, PCR | bg | C (1), D (1) | – | Solarczyk and Majewska [75] | | | Poland | 29 (31/108) | CM, PCR | tpi | C (2) | – | Bajer et al. [76] | | | Poland | 19 (7/36) | CM, PCR | bg | A (1), E (1) | NA | Stojecki et al. [77] | | | Poland | 6 (13/217) | PCR | bg | C (10), D (3) | – | Piekara-Stępińska et al. [78] | | | Spain | 16 (96/604) | CM, PCR | gdh, bg | A (3), B (22), C (1), D (7), A + B (3), A + C (3), A + E (1), B + C (3), B + D (11), B + E (4), C + D (1), C + E (1), B + C + D (3) | AI (10), BIII (21), BIV (25) | Dado et al. [79] | | | Spain | 37 (64/169) | CM, PCR | gdh, bg, tpi | C (1), D (4), C + D (1) | – | Ortuño et al. [80] | | | Spain | 29 (16/55) | CM, PCR | ssu-rRNA, gdh, bg | C (3) | – | De Lucio et al. [81] | | | Spain | 37 (127/348) | CM, PCR | ssu-rRNA, gdh, bg | A (5), B (8), C (2), D (13), A + B (4), A + D (1), A + B + D (2) | AII (11), AIII (2), BIII (7), BIV (8) | Adell-Aledón et al. [82] | | | Croatia | 62 (16/26) | CM, PCR | ssu-rRNA, ITS1-5.8S-ITS2, gdh, bg, tpi | C (6), D (10) | – | Sommer et al. [83] | | | Macedonia | 33 (45/136) | CM, PCR | ssu-rRNA, ITS1-5.8S-ITS2, gdh, bg, tpi | C (7), D (7) | – | Sommer et al. [83] | | | Romania | 36 (66/183) | CM, PCR | ssu-rRNA, ITS1-5.8S-ITS2, gdh, bg, tpi | C (8), D (8) | – | Sommer et al. [83] | | | Romania | 100 (39/39) | PCR1 | gdh | C (8), D (29), C + D (1), E (1) | – | Adriana et al. [27] | | | Serbia | 66 (88/134) | CM, PCR | ssu-rRNA, ITS1-5.8S-ITS2, gdh, bg, tpi | C (8), D (6) | – | Sommer et al. [83] | | | Greece | 25 (220/879) | CM, PCR | ssu-rRNA, gdh, bg, tpi | A (2), C (45), D (27), C + D (15), A + C (2), A + D (1), B + C (1) A + C + D (2) | AI (1), AII (1), BIV (1) | Kostopoulou et al. [84] | | | Czech Republic | 100 (54/54) | PCR1 | gdh, bg, tpi | C (21), D (32), C + D (1) | – | Lecová et al. [85] | | | Portugal | 17 (25/148) | CM, PCR | ssu-rRNA | B (1), C (15), D (12) | – | Ferreira et al. [86] | | | Portugal | 34 (27/80) | CM, PCR | gdh, bg, tpi | C (3), D (11), C + D (4) | – | Pereira et al. [87] | | | Portugal | 24 (11/46) | PCR | ssu-rRNA, gdh, bg, tpi | D (1) | – | This study | | Cryptosporidium spp. | Canis lupus familiaris | Czech Republic | 100 (2/2) | PCR1 | ssu-rRNA, cowp | C. parvum (1), C. meleagridis (1) | – | Hajdušek et al. [46] | | | Italy | 3 (8/240) | PCR | cowp | C. parvum (7), C. canis (1) | – | Giangaspero et al. [88] | | | Italy | 1 (3/285) | PCR | cowp | C. parvum (3) | – | Simonato et al. [59] | | | Italy | 2 (12/705) | PCR | ssu-rRNA, cowp | C. parvum (11), C. canis (1) | – | Simonato et al. [60] | | | Germany | 1 (1/81) | PCR | ssu-rRNA | C. parvum (1) | – | Sotiriadou et al. [68] | | | Germany | 10 (35/349) | PCR | ssu-rRNA, gp60 | C. canis (33), C. parvum (2) | IIa (2), XXd (5), XXe (6), XXb (2) | Murnik et al. [89] | | | France | 3 (3/116) | CM, PCR | ssu-rRNA | C. canis (3) | – | Osman et al. [90] | | | Greece | 6 (52/879) | CM, PCR | ssu-rRNA, hsp70 | C. canis (2), C. scrofarum (1) | – | Kostopoulou et al. [84] | | | Spain | 6 (3/55) | CM, PCR | ssu-rRNA | C. canis (2), Cryptosporidium spp. (1) | – | De Lucio et al. [81] | | | Norway | 1 (1/170) | CM, PCR | ssu-rRNA | C. canis (1) | – | Myšková et al. [91] | | Domestic ungulates | | Giardia duodenalis | Bos taurus | The Netherlands | 9 (57/628) | CM, PCR | gdh | A (5), B (4) | NA | Huetink et al. [92] | | | Italy | 30 (3/10) | CM, PCR | ssu-rRNA | E (3) | – | Berrilli et al. [54] | | | Italy | 100 (24/24) | CM, PCR | ssu-rRNA, gdh, bg | A (12), B (5), E (3), A + B (2), A + E (2) | A13 (8), A23 (1), A33 (2), A43 (1), B33 (1), B53 (2), B63 (2), E23 (1), E33 (1), E1 + E23 (1) | Lalle et al. [55] | | | Italy | 32 (162/503) | CM, PCR | bg, tpi | A (4), E (7), A + E (3) | NA | Geurden et al. [93] | | | Spain | 27 (101/379) | CM, PCR | gdh, bg | E (4) | – | Castro-Hermida et al. [94] | | | Spain | 19 (68/362) | PCR | ssu-rRNA, gdh, bg | E (15), F (4) | – | Cardona et al. [95] | | | Spain | 30 (192/649) | CM, PCR | bg | A (18), E (32) | AI (39) | Castro-Hermida et al. [96] | | | Denmark | 35 (401/1150) | CM, PCR | ssu-rRNA, gdh | A (8), E (137) | NA | Langkjær et al. [97] | | | Belgium | 31 (259/832) | CM, PCR | bg, tpi | A (43), E (77) | A23 (ND), A33 (ND), E23 (ND), E33 (ND) | Geurden et al. [98] | | | France | 40 (190/477) | CM, PCR | bg, tpi | A (8), E (4), A + E (8) | NA | Geurden et al. [93] | | | Germany | 51 (274/536) | CM, PCR | bg, tpi | A (8), E (9), A + E (7) | NA | Geurden et al. [93] | | | Germany | 73 (110/152) | PCR | ssu-rRNA, gdh, bg | A (8), E (101), A + E (1) | A13 (1), E23 (1), E33 (8) | Gillhuber et al. [99] | | | United Kingdom | 55 (305/556) | CM, PCR | bg, tpi | A (3), E (2), A + E (4) | NA | Geurden et al. [93] | | | Poland | 17 (16/86) | CM, PCR | bg | A (1), E (3) | NA | Stojecki et al. [77] | | | Austria | 27 (48/177) | CM, PCR | ssu-rRNA, bg, tpi | A (1), E (30) | NA | Lichtmannsperger et al. [100] | | | Portugal | 9 (42/467) | CM, PCR | gdh, bg | A (2), B (1), E (11) | A23 (2) | Mendonça et al. [101] | | | Portugal | 15 (13/87) | PCR | ssu-rRNA, gdh, bg, tpi | E (1) | – | This study | | Capra hircus | The Netherlands | 100 (1/1) | PCR1 | ssu-rRNA, gdh | E (1) | – | van der Giessen et al. [42] | | | Spain | 20 (23/116) | CM, PCR | gdh, bg | E (1) | – | Castro-Hermida et al. [94] | | | Spain | 42 (133/315) | CM, PCR | bg, tpi | E (31) | – | Ruiz et al. [102] | | | Belgium | 36 (53/148) | CM, PCR | bg, tpi | A (6), E (17), E + A (5) | A23 (6), E23 (6), E33 (16) | Geurden et al. [103] | | | Greece | 40 (103/255) | CM, PCR | bg, tpi | A (1), E (26), A + E (3) | NA | Tzanidakis et al. [104] | | Equus caballus | Italy | 13 (20/150) | CM, PCR | ssu-rRNA | E (20) | – | Veronesi et al. [105] | | | Italy | 9 (37/431) | PCR | ssu-rRNA, bg | A (16), B (11), E (10) | A13 (3), B1-23 (8), B1-63 (2), E33 (1) | Traversa et al. [106] | | | Belgium | 14 (19/134) | CM, PCR | bg, tpi | A (8), B (3) | AI (6), AII (2), BIV (3) | Kostopoulou et al. [107] | | | Germany | 10 (3/30) | CM, PCR | bg, tpi | NA | NA | Kostopoulou et al. [107] | | | Greece | 12 (22/190) | CM, PCR | bg, tpi | A (4), B (9), E (2) | AI (3), AII (1), BIV (9) | Kostopoulou et al. [107] | | | The Netherlands | 11 (5/44) | CM, PCR | bg, tpi | A (1), B (1) | AII (1) | Kostopoulou et al. [107] | | | Poland | 10 (1/10) | CM, PCR | bg | E (1) | – | Stojecki et al. [77] | | | Portugal | 8 (2/26) | PCR | ssu-rRNA, gdh, bg, tpi | E (1) | – | This study | | Ovis aries | Italy | 2 (5/325) | CM, PCR | gdh, bg | A (5) | AI (5) | Giangaspero et al. [108] | | | Italy | 100 (3/3) | PCR1 | tpi | B (3) | B12 | Aloiso et al. [10] | | | The Netherlands | 100 (2/2) | PCR1 | ssu-rRNA, gdh | E (2) | – | van der Giessen et al. [42] | | | Spain | 33 (118/575) | CM, PCR | bg | E (NA) | – | Castro-Hermida et al. [109] | | | Spain | 19 (86/446) | CM, PCR | gdh, bg | E (11), B (1) | NA | Castro-Hermida et al. [94] | | | Spain | 42 (162/386) | CM, PCR | bg | A (1), E (74) | A13 (1), E13 (2), E23 (2) | Gómez-Muñoz et al. [110] | | | Spain | 30 (112/377) | CM, PCR | bg | B (11), E (20) | – | Castro-Hermida et al. [96] | | | Spain | 89 (107/120) | CM, PCR | ssu-rRNA, gdh, bg, tpi | A (59), E (21), A + E (27) | AI (7), AII (1) | Gómez-Muñoz et al. [111] | | | Belgium | 26 (36/137) | CM, PCR | bg, tpi | A (2), E (4), E + A (2) | A23 (2), E23 (1), E33 (5) | Geurden et al. [103] | | | Norway | 22 (244/1095) | CM, PCR | gdh, bg | B (1), E (47) | NA | Robertson et al. [112] | | | Greece | 37 (160/429) | CM, PCR | bg, tpi | A (1), E (35), A + E (3) | NA | Tzanidakis et al. [104] | | | Poland | 22 (18/81) | CM, PCR | bg | A (6), E (10) | NA | Stojecki et al. [77] | | | Portugal | 17 (8/46) | PCR | ssu-rRNA, gdh, bg, tpi | E (2) | – | This study | | Cryptosporidium spp. | Bos taurus | Poland | 43 (146/342) | CM, PCR | ssu-rRNA | C. muris (1), C. felis (1) | – | Bornay-Llinares et al. [113] | | | Poland | 17 (119/700) | PCR | ssu-rRNA, cowp, LIB13 | C. bovis (52), C. parvum (36), C. andersoni (17), C. ryanae (8) | – | Rzeżutka and Kaupke [114] | | | Poland | 10 (76/779) | PCR | ssu-rRNA, cowp, LIB13, gp60 | C. parvum (76) | IIa (64), IId (7), IIl (5) | Kaupke and Rzeżutka [115] | | | Poland | 45 (725/1601) | PCR | ssu-rRNA, gp60 | C. parvum (98), C. parvum + C. bovis (2), Cryptosporidium spp. (625) | IIa (80), IId (2) | Kaupke and Rzeżutka [116] | | | Czech Republic | 100 (4/4) | PCR1 | ssu-rRNA, ITS1, hsp70 | C. muris (4) | – | Morgan et al. [117] | | | Czech Republic | 100 (11/11) | PCR1 | ssu-rRNA, hsp70 | C. andersoni (9), C. parvum, (2) | – | Ryan et al. [118] | | | Czech Republic | 100 (2/2) | PCR1 | ssu-rRNA, cowp | C. parvum (1), C. andersoni (1) | – | Hajdušek et al. [46] | | | Czech Republic | 5 (49/995) | CM, PCR | ssu-rRNA, gp60 | C. andersoni (41), C. bovis (2), C. parvum (1) | IIa (1) | Ondráčková et al. [119] | | | Czech Republic | 21 (159/750) | CM, PCR | ssu-rRNA, gp60 | C. parvum (137), C. andersoni (21), C. bovis (3) | IIa (131) | Kváč et al. [120] | | | The Netherlands | 9 (54/628) | CM, PCR | cowp | C. parvum (27) | – | Huetink et al. [92] | | | The Netherlands | 100 (160/160) | PCR1 | ssu-rRNA, hsp70, cowp, gp60 | C. parvum (160) | IIa (129), IIj (1) | Wielinga et al. [121] | | | The Netherlands | 17 (69/399) | PCR | ssu-rRNA, gp60 | C. parvum (59), C. bovis (6), C. ryanae (4) | IIa (47) | Pinto et al. [122] | | | Portugal | 23 (129/553) | CM, PCR | cowp, TRAP-C1 | C. parvum (14) | – | Fonseca et al. [123] | | | Portugal | 100 (35/35) | PCR1 | ssu-rRNA, gp60 | C. parvum (35) | IIa (29), IId (3) | Alves et al. [124] | | | Portugal | 98 (40/41) | PCR1 | gp60 | C. parvum (40) | IIa (39), IId (1) | Alves et al. [125] | | | Portugal | 18 (82/467) | CM, PCR | ssu-rRNA, hsp70 | C parvum (78), C. meleagridis (1), C. andersoni (1) | – | Mendonça et al. [101] | | | Denmark | 31 (90/292) | CM, PCR | ssu-rRNA | C. andersoni (59), C. parvum (21), C. andersoni + C. parvum (10) | – | Enemark et al. [126] | | | Denmark | 56 (108/193) | CM, PCR | cowp, ssu-rRNA | C. parvum genotype II (108) | – | Enemark et al. [127] | | | Denmark | 29 (336/1150) | CM, PCR | ssu-rRNA, hsp70 | C. parvum (79), C. bovis (57), C. deer-like genotype4 (11), C. suis (2) | – | Langkjær et al. [97] | | | Ireland | 7 (21/288) | CM, PCR | ssu-rRNA | C. andersoni (11), C. parvum genotype II (10) | – | Moriarty et al. [128] | | | Ireland | 37 (291/779) | CM, PCR | ssu-rRNA, gp60 | C. parvum (215), C. bovis (5), C. deer-like genotype4 (3) | IIa (215) | Thompson et al. [129] | | | Ireland | 25 (342/1368) | CM, PCR | ssu-rRNA, gp60 | C. parvum (84), C. bovis (4), C. ryanae (1) | IIa (265) | De Waele et al. [130] | | | Ireland | 66 (68/103) | PCR1 | ssu-rRNA, gp60 | C. ryanae (36), C. bovis (23), C. parvum (16), C. andersoni (4), Cryptosporidium pig genotype5 (1), Cryptosporidium spp. (19), C. bovis + C. xiaoi (17), C. parvum + C. hominis (3), C. ryanae + C. bovis (2) | IIa (9) | Mirhashemi et al. [131] | | | United Kingdom | 16 (16/101) | CM, PCR | ssu-rRNA | C. andersoni (7) | – | Robinson et al. [132] | | | Serbia/Montenegro | 60 (62/103) | PCR | ssu-rRNA, cowp, gp60 | C. parvum (62) | IIa (38), IIj (21), IId (3) | Misic and Abe [133] | | | Spain | 14 (41/291) | CM, PCR | hsp70 | C. parvum (41) | – | Castro-Hermida et al. [134] | | | Spain | 8 (32/379) | CM, PCR | ssu-rRNA, hsp70 | C. parvum (10) | – | Castro-Hermida et al. [94] | | | Spain | 58 (166/287) | CM, PCR | ssu-rRNA, gp60 | C. parvum (147), C. bovis (2) | IIa (138), IId (2) | Quilez et al. [135] | | | Spain | 49 (30/61) | CM, PCR | ssu-rRNA, gp60 | C. parvum (27) | IIa (27) | Díaz et al. [136] | | | Spain | 15 (97/649) | CM, PCR | ssu-rRNA | C. parvum (41) C. andersoni (17) | – | Castro-Hermida et al. [96] | | | Spain | 94 (131/140) | PCR1 | ssu-rRNA, gp60 | C. parvum (131) | IIa (129), IId (2) | Quílez et al. [137] | | | Spain | 12 (45/362) | PCR | ssu-rRNA | C. felis (4), C. bovis (2), Cryptosporidium spp. (3) | – | Cardona et al. [95] | | | Spain | 17 (99/594) | PCR | ssu-rRNA, gp60 | C. parvum (42), C. bovis (36), C. ryanae (10), C. occultus (7), C. andersoni (2), C. xiaoi (1) | IIa (30) | Díaz et al. [138] | | | Belgium | 19 (155/832) | CM, PCR | ssu-rRNA, hsp70 | C. parvum (105), C. bovis (9), C. suis (1) | IIa (89), IId (1) | Geurden et al. [139] | | | Belgium | 18 (63/355) | PCR | ssu-rRNA, gp60 | C. parvum (45), C. bovis (14), C. ryanae (4) | IIa (39) | Pinto et al. [122] | | | Hungary | 49 (39/79) | CM, PCR | ssu-rRNA, gp60 | C. parvum (21), Cryptosporidium deer-like genotype4 (1) | IIa (19), IId (2) | Plutzer et al. [140] | | | Germany | 36 (48/134) | CM, PCR | ssu-rRNA, cowp, gp60 | C. parvum (53) | IIa (52), IId (1) | Broglia et al. [141] | | | Germany | 89 (455/512) | CM, PCR | ssu-rRNA, gp60 | C. parvum (395) | IIa (395) | Holzhausen et al. [142] | | | Germany | 87 (233/268) | PCR1 | ssu-rRNA, gp60 | C. parvum (233) | IIa (226) | Göhring et al. [143] | | | Slovenia | ND (51/ND) | PCR | ssu-rRNA, gp60 | C. parvum (45), C. bovis (3), C. ryanae | IIa (41), IIl (4) | Soba and Logar [144] | | | Italy | 8 (155/2024) | CM, PCR | cowp, gp60 | C. parvum (101) | IIa (62) | Duranti et al. [145] | | | Italy | 100 (122/122) | PCR1 | cowp | C. parvum (122) | – | Drumo et al. [146] | | | Italy | 39 (57/147) | CM, PCR | ssu-rRNA, gp60 | C. parvum (46), C. bovis (2) | IIa (33), IId (3) | Díaz et al. [147] | | | France | 35 (147/422) | PCR | ssu-rRNA, gp60 | C. parvum (60), C. ryanae (39), C. bovis (37), C. ubiquitum (1) | IIa (51) | Follet et al. [148] | | | France | 46 (84/182) | CM, PCR | ssu-rRNA, gp60 | C. ryanae (22), C. bovis (15), C. parvum (14), C. bovis + C. ryanae (5), C. bovis + C. parvum (4), C. parvum + C. ryanae (1) | IIa (15) | Rieux et al. [149] | | | France | 31 (92/300) | CM, PCR | ssu-rRNA, gp60 | C. parvum (80), C. bovis (2) | IIa (52) | Rieux et al. [150] | | | France | 36 (32/88) | CM, PCR | ssu-rRNA | C. bovis (27), C. ryanae (4), C. parvum (1) | – | Rieux et al. [151] | | | France | 64 (201/312) | CM, PCR | ssu-rRNA, gp60 | C. parvum (80), C. bovis (53), C. ryanae (19), C. bovis + C. parvum (4), C. bovis + C. ryanae (4) | IIa (51) | Rieux et al. [152] | | | France | 21 (86/412) | CM, PCR | ssu-rRNA, gp60 | C. parvum (71), C. hominis (15) | IIa (71), Ib (15) | Razakandrainibe et al. [153] | | | France | 89 (31/35) | CM, PCR | ssu-rRNA, gp60 | C. parvum (30) | IIa (24), IId (3) | Mammeri et al. [154] | | | France | 23 (79/350) | PCR | ssu-rRNA, gp60 | C. parvum (51), C. bovis (22), C. ryanae (4), C. andersoni (1), C. xiaoi (1) | IIa (47) | Pinto et al. [122] | | | Romania | 25 (65/258) | CM, PCR | ssu-rRNA, gp60 | C. parvum (65) | IIa (13) | Imre et al. [155] | | | Romania | 59 (17/29) | PCR1 | ssu-rRNA, gp60 | C. parvum (17) | IIa (1), IId (16) | Vieira et al. [156] | | | Sweden | 63 (110/176) | PCR1 | ssu-rRNA, gp60 | C. bovis (83), C. parvum 15), C. ryanae (10), C. andersoni (2) | IIa (7), IId (6) | Silverlås et al. [157] | | | Sweden | 31 (242/782) | CM, PCR | ssu-rRNA, gp60 | C. parvum (171), C. bovis (7), C. bovis+ C. parvum (5) | IIa (136), IId (40) | Silverlås et al. [158] | | | Sweden | ND (ND/480) | CM, PCR | ssu-rRNA, gp60 | C. bovis (48), C. ryanae (11), C. parvum (2) | IIa (2) | Silverlås and Blanco-Penedo [159] | | | Sweden | 37 (122/332) | CM, PCR | ssu-rRNA, gp60 | C. bovis (72), C. ryanae (13), C. parvum (8), C. ubiquitum (1), C. bovis + C. parvum (13), C. ryanae + C. parvum (6) | IIa (7), IId (16) | Björkman et al. [160] | | | Sweden | 39 (92/238) | CM, PCR | ssu-rRNA, gp60 | C. bovis (63), C. ryanae (7), C. bovis + C. ryanae (2) | NA | Åberg et al. [161] | | | Sweden | 22 (99/455) | CM, PCR | ssu-rRNA, gp60 | C. bovis (46), C. ryanae (7), C. bovis + C. ryanae (2) | NA | Åberg et al. [162] | | | Estonia | 18 (9/49) | CM, PCR | ssu-rRNA, hsp70, gp60 | C. parvum (1) | IIa (1) | Lassen et al. [163] | | | Estonia | 23 (110/486) | PCR | ssu-rRNA, gp60 | C. parvum (105), C. bovis (4), C. ryanae (1) | IIa (90), IIl (5) | Santoro et al. [164] | | | Slovakia | 14 (14/100) | PCR | ssu-rRNA, gp60 | C. parvum (10), C. bovis (4) | IIa (10) | Danišová et al. [165] | | | Austria | 55 (98/177) | CM, PCR | gp60 | C. parvum (37) | IIa (35) | Lichtmannsperger et al. [100] | | | Austria | 55 (98/177) | CM, PCR | ssu-rRNA, gp60 | C. parvum (67), C. ryanae (11), C. bovis (7) | IIa (65) | Lichtmannsperger et al. [166] | | | Cyprus | 44 (106/242) | PCR | ssu-rRNA, gp60 | C. parvum (50), C. bovis (23), C. ryanae (28), C. ryanae + C. parvum (5) | IIa (47) | Hoque et al. [167] | | | Latvia | 34 (313/926) | CM, PCR | ssu-rRNA, gp60 | C. parvum (62), C. bovis (29), C. andersoni (22), C. ryanae (11), C. scrofarum (1), C. ubiquitum (1), C. parvum + C. bovis (3), C. bovis + C. ryanae (3), C. parvum + C. andersoni (1), C. parvum + C. ryanae (1), C. bovis + C. andersoni (1) | IIa (55), IId (3) | Deksne et al. [168] | | Capra hircus | Czech Republic | 100 (1/1) | PCR1 | ssu-rRNA, cowp | C. parvum (1) | – | Hajdušek et al. [46] | | | Spain | 40 (2/5) | CM, PCR | ssu-rRNA | C. xiaoi (2) | – | Díaz et al. [169] | | | Spain | 100 (17/17) | PCR1 | ssu-rRNA, gp60 | C. parvum (17) | IId (17) | Quílez et al. [135] | | | Spain | 63 (74/118) | CM, PCR | ssu-rRNA, gp60 | C. parvum (60), C. xiaoi (4), C. parvum + C. xiaoi (1) | IIa (55), IId (3) | Díaz et al. [170] | | | Spain | 6 (14/234) | PCR | ssu-rRNA, gp60 | C. parvum (3), C. ubiquitum (5), C. xiaoi (5) | IIa (1), IId (2), XIIa (3) | Díaz et al. [171] | | | Belgium | 10 (14/148) | CM, PCR | ssu-rRNA, hsp70, gp60 | C. parvum (11) | IIa (3), IId (8) | Geurden et al. [103] | | | The Netherlands | 100 (1/1) | PCR1 | hsp70, gp60, ML1 | C. parvum (1) | IIa (1) | Wielinga et al. [121] | | | Italy | 100 (21/21) | PCR1 | cowp | C. parvum (21) | – | Drumo et al. [146] | | | Norway | 21 (4/19) | CM, PCR | ssu-rRNA, LIB13, gp60 | C. parvum (3), C. xiaoi (1) | IIa (3) | Lange et al. [172] | | | France | 24 (61/254) | CM, PCR | ssu-rRNA, gp60 | C. xiaoi (18), C. parvum (1) | NA | Rieux et al. [173] | | | France | NA (22/ND) | CM, PCR | ssu-rRNA | C. ubiquitum (12) | – | Paraud et al. [174] | | | Greece | 7 (18/255) | CM, PCR | ssu-rRNA, hsp70, gp60 | C. xiaoi (7), C. ubiquitum (5), C. parvum (2) | IId (2) | Tzanidakis et al. [104] | | | Greece | 28 (41/148) | CM, PCR | ssu-rRNA, gp60 | C. parvum (16), C. xiaoi (1) | IIa (5), IId (11) | Papanikolopoulou et al. [175] | | | Poland | 37 (39/105) | PCR | ssu-rRNA, gp60 | C. xiaoi (29), C. parvum (1) | IId (1) | Kaupke et al. [176] | | Equus caballus | Czech Republic | 100 (3/3) | PCR1 | ssu-rRNA, cowp | C. parvum (3) | – | [46] | | | Czech Republic/Poland | 3 (12/352) | PCR | ssu-rRNA, gp60 | C. muris (9), C. parvum (1), C. tyzzeri (1), Cryptosporidium horse genotype (1) | IIa (1), IXb (1), VIa (1) | Wagnerová et al. [177] | | | Italy | 8 (12/540) | CM, PCR | cowp | C. parvum (12) | – | Veronesi et al. [105] | | | Italy | 2 (4/185) | CM, PCR | cowp | C. parvum genotype II (4) | – | Perrucci et al. [178] | | | Italy | 38 (14/37) | PCR | ssu-rRNA, gp60 | Cryptosporidium horse genotype (11), C. parvum (3) | VIa (9) | Caffara et al. [179] | | | Italy | 17 (35/205) | CM, PCR | ssu-rRNA, gp60 | C. parvum (5), Cryptosporidium. horse genotype (21), C. parvum + C. horse genotype (9) | IIa (6), IId (2), VIa (20) | Galuppi et al. [180] | | | Belgium | 5 (6/134) | CM, PCR | ssu-rRNA, hsp70 | Cryptosporidium horse genotype (6) | – | Kostopoulou et al. [107] | | | Greece | 1 (2/190) | CM, PCR | ssu-rRNA, hsp70 | Cryptosporidium horse genotype (2) | – | Kostopoulou et al. [107] | | | Ireland | 56 (23/41) | PCR1 | ssu-rRNA, gp60 | C. ryanae (17), C. parvum (4), C. bovis (1), Cryptosporidium horse genotype (1), C. pig genotype6 (1), C. bovis + C. xiaoi (5), C. andersoni + C. bovis (1), C. andersoni + C. bovis (1) | IIj (1) | Mirhashemi et al. [131] | | | Portugal | 21 (3/14) | CM, PCR | ssu-rRNA, hsp70 | C. parvum (1) | IIa (1) | Couso-Pérez et al. [181] | | | Spain | 11 (7/65) | CM, PCR | ssu-rRNA, hsp70 | C. parvum (6) | IIa (2) | Couso-Pérez et al. [181] | | Ovis aries | Poland | 10 (16/159) | CM, PCR | ssu-rRNA | C. spp. (10) | – | Majewska et al. [182] | | | Poland | 19 (45/234) | PCR | ssu-rRNA, gp60 | C. xiaoi (30), C. bovis (9), C. ubiquitum (3), C. xiaoi + C. parvum + C. hominis (1), C. xiaoi + C. parvum (1), C. xiaoi + Cryptosporidium spp. (1) | IIa (2) | Kaupke et al. [176] | | | Denmark | 100 (1/1) | PCR1 | cowp, ssu-rRNA | C. parvum (1) | – | Enemark et al. [127] | | | Portugal | 100 (2/2) | PCR1 | ssu-rRNA, gp60 | C. parvum (2) | IIa (1), IId (1) | Alves et al. [125] | | | Belgium | 13 (18/137) | CM, PCR | ssu-rRNA, hsp70, gp60 | Cryptosporidium cervine genotype7 (9), C. parvum (1) | IIa (1) | Geurden et al. [103] | | | United Kingdom | 43 (127/297) | CM, PCR | ssu-rRNA, cowp | C. parvum (52), C. bovis (5), Cryptosporidium cervine genotype7 (1) | – | Mueller-Doblies et al. [183] | | | Italy | 17 (26/149) | CM, PCR | cowp | C. parvum (26) | – | Paoletti et al. [184] | | | Italy | 100 (21/21) | PCR1 | cowp | C. parvum (21) | – | Drumo et al. [146] | | | Italy | 4 (1/27) | CM, PCR | gp60 | C. parvum (4) | IIa (4) | Cacciò et al. [185] | | | Italy | 10 (92/915) | CM, PCR | ssu-rRNA, gp60 | C. parvum (11), C. ubiquitum (4) | IIa (5), IId (1), XIIa (4) | Dessì et al. [186] | | | The Netherlands | 100 (1/1) | PCR1 | hsp70, gp60, ML1 | C. parvum (1) | IIa (1) | Wielinga et al. [121] | | | Spain | 100 (131/131) | PCR1 | ssu-rRNA, gp60 | C. parvum (131) | IIa (3), IId (128) | Quílez et al. [187] | | | Spain | 31 (39/127) | CM, PCR | ssu-rRNA, gp60 | C. parvum (14), Cryptosporidium cervine genotype7 (9) | IIa (12) | Díaz et al. [136] | | | Spain | 19 (42/227) | CM, PCR | ssu-rRNA | C. parvum (27) | – | Castro-Hermida et al. [96] | | | Spain | 32 (54/171) | CM, PCR | ssu-rRNA, gp60 | C. parvum (31), C. ubiquitum (10), C. parvum + C. ubiquitum (1) | IIa (26) | Díaz et al. [170] | | | Spain | 6 (19/324) | PCR | ssu-rRNA, gp60 | C. parvum (13), C. ubiquitum (1), C. xiaoi (3) | IIa (8), XIIa (1) | Díaz et al. [171] | | | Norway | 15 (160/1095) | CM, PCR | ssu-rRNA, actin | Cryptosporidium cervine genotype7 (35), C. xiaoi (7) | – | Robertson et al. [112] | | | Norway | 100 (2/2) | CM, PCR | ssu-rRNA, LIB13, gp60 | C. parvum (1), C. xiaoi (1) | IIa (2) | Lange et al. [172] | | | Romania | 14 (24/175) | CM, PCR | ssu-rRNA, gp60 | C. parvum (20), C. ubiquitum (2), C. xiaoi + C. bovis (2) | IIa (3), IId (4) | Imre et al. [188] | | | Greece | 5 (22/429) | CM, PCR | ssu-rRNA, hsp70, gp60 | C. parvum (7), C. ubiquitum (3), C. parvum (7) | IId (7) | Tzanidakis et al. [104] | | | Greece | 30 (39/132) | CM, PCR | ssu-rRNA, gp60 | C. parvum (16) | IIa (9), IId (4) | Papanikolopoulou et al. [175] | | | Ireland | 49 (51/104) | PCR1 | ssu-rRNA, gp60 | C. parvum (14), C. xiaoi (10), C. ryanae (9), C. ubiquitum (7), C. bovis (1), Cryptosporidium spp. (15), C. bovis + xiaoi (18) | IIa (6) | Mirhashemi et al. [131] | | | France | 100 (23/23) | CM, PCR | ssu-rRNA, gp60 | C. parvum (23) | IIa (23) | Mammeri et al. [189] | | | France | 35 (53/151) | CM, PCR | ssu-rRNA, LIB13, gp60 | C. parvum (10), C. xiaoi (4), C. ubiquitum (1) | IIa (3), IId (2) | Bordes et al. [190] |
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