The Genetic Diversity and Interspecific Transmission of Circovirus in Rhizomys sinensis in Guangdong, Southern China

Table 1

The information of the contigs assembled from circovirus reads in this study.

Reference virus	Number of matched contig	Contigs length (nt)	Nucleotide identity (%)	Query cover (%)	Geographical location
Bamboo rat circovirus	17	357–2,239	68.32–100	9–100	Shaoguan, Zhanjiang, Yunfu
Porcine circovirus 2	2	496, 1,105	97.30–99.8	100	Meizhou
Dromedary stool-associated circular ssDNA virus	1	593	74.87	100	Zhanjiang
Rodent circovirus	7	448–3,615	68–94.74	1–33	Shaoguan, Zhanjiang, Yangjiang
Porcine circovirus-like virus	2	472, 476	70.3–88.71	7–11	Shaoguan
Human fecal virus Jorvi2	1	3,628	74.05	3	Shaoguan
Circoviridae spp.	6	309–4,382	64.19–90.57	1–30	Shaoguan, Zhanjiang