Isolation and Characterization of Porcine Sapelovirus from the PDCoV-Positive Sample and Its Molecular Epidemiology in Henan Province, China

Table 2

Recombination events identified by RDP4 and simplot software.

Recombinants	Major parent	Minor parent	Breakpoint positions^a(bp)		Recombinant scores^b (%)	Recombinant positions^c (bp)
			Beginning	End
HNNY-03/CHN/2018	HNNY-02/CHN/2018	HNHB-02/CHN/2016	1,662	2,767	46	—
HNNY-02/CHN/2018	HNNY03/CHN/2018	HNXX02/CHN/2017	3,224	3,632	46.5	—
HNNY-02/CHN/2018	YC2011	HNNY-03/CHN/2018	3,614	952	63.3	970–4,819

Recombinant region breakpoints at nucleotide positions of predicted recombinant strains. ^ascore greater than 40 and less than 60 means that the strain is likely to be a recombinant strain; ^ascore less than 40 means that the strain is likely not to be a recombinant strain. ^bA score greater than 60 means that the strain is almost certainly a recombinant strain; ^cReorganization breakpoints determined after Simplot software analysis. —Reorganization breakpoint not detected.