Mechanism of Gene Amplification via Yeast Autonomously Replicating Sequences

Table 5

Software/online tools used in the present study.

Database/software	Address
SGD	http://www.yeastgenome.org/
oriDB	http://www.oridb.org/index.php
WEBTHERMODYN	http://www.gsa.buffalo.edu/dna/dk/WEBTHERMODYN/
TREP	http://www.oridb.org/index.php
bend.it	http://www.icgeb.trieste.it/dna/
TwistFlex	http://bioinfo.md.huji.ac.il/marg/Flexstab/
model.it	http://www.icgeb.trieste.it/dna/
RasMol	http://biology.kenyon.edu/BMB/RASWIMAN.HTM
BL2SEQ	http://workbench.sdsc.edu/ (http://seqtool.sdsc.edu/CGI/BW.cgi)
CLUSTALW	http://www.ebi.ac.uk/Tools/msa/clustalw2/
banana	http://services.cbib.u-bordeaux2.fr/pise/banana.html
EMBOSS	http://www.ebi.ac.uk/Tools/emboss/
RNAfold	http://rna.tbi.univie.ac.at/cgi-bin/RNAfold.cgi
GeneiousPro	Software package
KaleidaGraph 3.0	http://www.synergy.com/kg.htm