In Silico Analysis on the Interaction of Haloacid Dehalogenase from Bacillus cereus IndB1 with 2-Chloroalkanoic Acid Substrates

Table 4

The structure alignment results of Bcfd1 with the haloacid dehalogenases using the DALI server.

No.	PDB	Organism	Protein	Z-score	Identity (%)	Residues aligned	RMSD (Å)	Reference
		Bacillus cereus	Bcfd1
1	3vay_A	Pseudomonas syringae	Ps-2-HAD	10,7	13	120	2, 6	[17]
2	3um9_A	Polaromonas sp. JS666	—	10,5	12	125	2, 6	—
3	1zrm_A	Pseudomonas sp. YL	L-DEX YL	10,4	12	119	2, 4	[40]
4	1jud_A	Pseudomonas sp. YL	L-DEX YL	10,3	10	124	2, 5	[41]
5	2w43_A	Sulfolobus tokodaii	—	10,1	[42]
6	1zrn_A	Pseudomonas sp. YL	L-DEX YL	10,2	11	124	2, 5	[40]
7	4cf3_A	Rhodobacteraceae	DehRhb	9,9	13	127	3, 0	—
8	2yn4_A	Rhodobacteraceae	DehRhb	9,7	13	130	3, 0	[7]
9	4cnq_A	Rhodobacteraceae	DehRhb	9,7	14	130	3, 0	—
10	1qq5_A	Xanthobacter autotrophicus	DhlB	9,6	15	128	2, 8	[43]
11	1qq6_A	Xanthobacter autotrophicus	DhlB	9,6	13	129	2, 8	[43]
12	4ce6_A	Rhodobacteraceae	DehRhb	9,6	15	129	3, 0	—
13	1qq7_A	Xanthobacter autotrophicus	DhlB	9,6	14	129	2, 8	[43]
15	2no5_A	Burkholderia cepacia	DehIVa	9,3	15	127	2, 8	[10]
16	1aq6_A	Xanthobacter autotrophicus	DhlB	9,2	14	127	2, 8	[44]
17	2no4_A	Burkholderia cepacia	DehIVa	9,2	14	125	2, 7	[10]
18	2w11_A	Sulfolobus tokodaii	—	9,1	14	126	2, 9	[42]
19	1qh9_A	Pseudomonas sp. YL	L-DEX YL	8,9	11	124	2, 5	—
20	3umg_A	Rhodococcus jostii RHA1	—	8,8	11	132	3, 3	—
21	2ymp_A	Rhodobacteraceae	DehRhb	8,8	14	128	3, 1	[7]
22	2ymm_A	Rhodobacteraceae	DehRhb	8,7	13	126	2, 9	[7]
23	3umb_A	Ralstonia solanacearum	—	8,6	14	122	2, 5	—
24	4cf5_A	Rhodobacteraceae	DehRhb	8,6	11	124	2, 9	—
25	4cf4_A	Rhodobacteraceae	DehRhb	8,5	13	129	2, 9	—
26	2yml_A	Rhodobacteraceae	DehRhb	8,4	13	129	3, 0	[7]
27	3umc_A	Pseudomonas aeruginosa	—	8,4	9	127	3, 0	—
28	2ymq_A	Rhodobacteraceae	DehRhb	8.3	13	128	3.0	[7]