| | Names | Number | Pathway name |
| | Active vs. remission active vs. healthy remission vs. healthy | 4 | PWY-6470, PWY-6396, P125-PWY, GALLATE-DEGRADATION-II-PWY |
| | Active vs. healthy remission vs. healthy | 40 | PWY-6338, CMP352CT, PWY-5177, DHGLUCONATE-PYR-CAT-PWY, PWY-6383, PWY-5655, PWY-7209, CHLOROPHYLL-SYN, PWY-5910, PWY-7347, PWY1G-0, CMT174CT, PWY-5420, PWY-5005, PWY-5419, LACTOSECAT-PWY, CRNFORCAT-PWY, PWY-6339, DENITRIFICATION-PWY, PWY-7097, PWY0-42, PWY-5529, PWY-922, PWY-5183, PWY-5430, POLYAMINSYN3-PWY, P381-PWY, CMB025CT, PWY-6397, P101-PWY, NADSYN-PWY, P184-PWY, PWY-7376, PWY-7159, PWY-7007, PWY-6944, PWY-7098, PWY-7616, PWY-5747, CMC137CT |
| | Active vs. remission active vs. healthy | 15 | GOLPDLCAT-PWY, XYPHENYLACETATE-DEGRADATION-PWY, 3-HYDRO, CMT552CT, METHYLGALLATE-DEGRADATION-PWY, PWY-5417, TYRFUMCAT-PWY, CMS125CT, PWY-6182, CATECHOL-ORTHO-CLEAVAGE-PWY, PWY-5181, GALLATE-DEGRADATION-I-PWY, PWY-5431, PWY-5415, PWY-6185, PROTOCATECHUATE-ORTHO-CLEAVAGE-PWY |
| | Active vs. remission vs. healthy | 7 | CMN129CT, ORNARGDEG-PWY, THREOCAT-PWY, PWY0-321, PWY-6071, ARGDEG-PWY, PWY0-1277 |
| | Active vs. healthy | 35 | PWY-6165, CMP292CT, PWY-6210, PWY-7431, SUCSYN-PWY, P341-PWY, PWY-7090, PWY-5920, PWY-5178, P281-PWY, CMF152CT, PWY-5028, PWY-7094, LPSSYN-PWY, PWY-7446, PWY-6876, PWY-7371, PWY-6505, REDCITCYC, PWY-6263, PWY-4361, PWY-5304, PWY-6629, PWY-5654, PWY-1882, CMG141CT, METHGLYUT-PWY, PWY-7374, PWY-6590, CMP193CT, P461-PWY, CENTFERM-PWY, VALDEG-PWYKETOGLUCONMET-PWY |
| | Remission vs. healthy | 2 | PWY-722, CMC120CT |
| | Active vs. remission | 16 | CODH-PWY, HCAMHPDEG-PWYGLUCARDEG-PWY, CMI016CT, UBISYN-PWY, AST-PWY,PWY-5856, PWY-6641, PWY-6690, PWY0-1338, GLUCARGALACTSUPER-PWY, ECASYN-PWY, PWY-5857, GALACTARDEG-PWY, PWY-6708, GLYCOL-GLYOXDEG-PWY |
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