| | Gene set | No. of DEGs (%) | -Log10(FDR) | DEGs | Ref. |
| | NABA MATRISOME | 30 (26.1) | 22.806 | Bgn, C1qtnf7, Cela3a, Cilp, Col14a1, Fbln1, Fgf21, Flt3lg, Gdf10, Hmcn1, Hmcn2, Itih4, Lgals9b, Mdk, Mfap4, Mgp, Ogn, Pcsk5, Plod2, Prss1, Ptn, Reg1b, Reg3g, Reln, Sfrp1, Slit2, Sparcl1, Sulf2, Vtn, Wnt5a | [35] |
| | BOQUEST STEM CELL UP | 18 (15.7) | 19.127 | C7, Cilp, Col14a1, Fbln1, Fxyd1, Gdf10, Gfpt2, Itgbl1, Mfap4, Mgp, Myoc, Ogn, Olfml2b, Olfml3, Pdgfrl, Slit2, Tmem45a, Wnt5a | [43] |
| | CHEN_METABOLIC_SYNDROM_NETWORK | 24 (20.9) | 14.042 | Bgn, Casp1, Col14a1, Cygb, Fes, Fetub, Gask1b, Gdf10, Ifi16, Itgbl1, Lyl1, Mrc1, Ms4a6a, Ms4a7, Nfam1, Numbl, Olfml3, Padi2, Pdgfrl, Pla2g7, Renbp, Stab1, Vtn, Znf521 | [44] |
| | CHICAS_RB1_TARGETS_CONFLUENT | 18 (15.7) | 13.430 | Ahnak, Bgn, C7, Ephb2, Fbln1, Galnt15, Gask1b, Ifi16, Itgbl1, Mdk, Mfap4, Olfml3, Pdgfrl, Ptn, Reln, Sfrp1, Tenm4, Vgll3 | [36] |
| | SMID_BREAST_CANCER_NORMAL_LIKE_UP | 17 (14.8) | 13.430 | C7, Casp1, Ccr2, Col14a1, Elmo1, Flt3lg, Fxyd1, Ifi16, Lyl1, Mfap4, Mrc1, Ms4a6a, Pcsk5, Ptn, Reln, Sfrp1, Sparcl1 | [37] |
| | NABA_CORE_MATRISOME | 13 (11.3) | 11.257 | Bgn, Cilp, Col14a1, Fbln1, Hmcn1, Hmcn2, Mfap4, Mgp, Ogn, Reln, Slit2, Sparcl1, Vtn | [35] |
| | DELYS_THYROID_CANCER_DN | 12 (10.4) | 10.732 | Elmo1, Epha3, Fbln1, Fxyd1, Gdf10, Mgp, Myoc, Ogn, Pla2g7, Ptn, Reln, Sfrp1 | [38] |
| | NABA_MATRISOME_ASSOCIATED | 17 (14.8) | 10.353 | C1qtnf7, Cela3a, Fgf21, Flt3lg, Gdf10, Itih4, Lgals9b, Mdk, Pcsk5, Plod2, Prss1, Ptn, Reg1b, Reg3g, Sfrp1, Sulf2, Wnt5a | [35] |
| | SCHAEFFER_PROSTATE_DEVELOPMENT_48HR_DN | 14 (12.2) | 10.300 | C1qtnf7, Cpxm2, Ephb2, Fam107b, Fbln1, Gypc, Lbp, Mfap4, Ms4a7, Pcdh18, Prox1, Slit2, Sparcl1, Znf521 | [39] |
| | LIM_MAMMARY_STEM_CELL_UP | 14 (12.2) | 9.564 | Col14a1, Cygb, Fbln1, Fxyd1, Gypc, Klhl29, Ngfr, Pcdh18, Pla2g7, Reln, Scn4b, Slc38a5, Slit2, Vgll3 | [45] |
| | ONDER_CDH1_TARGETS_2_UP | 11 (9.6) | 8.959 | Bgn, Ephb2, Fbln1, Gypc, Itgbl1, Olfml3, Pdgfrl, Plod2, Prune2, Wnt5a, Zfhx4 | [46] |
| | SCHUETZ_BREAST_CANCER_DUCTAL_INVASIVE_UP | 12 (10.4) | 8.846 | Bgn, Casp1, Cilp, Col14a1, Gfpt2, Ifi16, Itgbl1, Ms4a6a, Nox4, Olfml2b, Olfml3, Sparcl1 | [40] |
| | NABA_ECM_GLYCOPROTEINS | 10 (8.7) | 8.758 | Cilp, Fbln1, Hmcn1, Hmcn2, Mfap4, Mgp, Reln, Slit2, Sparcl1, Vtn | [35] |
| | LEE_BMP2_TARGETS_UP | 15 (13.0) | 8.396 | Casp1, Cilp, Ckb, Cpxm2, Fam102b, Fxyd1, Galnt15, Mfap4, Mgp, Ngfr, Nkd2, Pld1, Renbp, Vtn, Znf521 | [47] |
| | WEST_ADRENOCORTICAL_TUMOR_DN | 13 (11.3) | 7.912 | Ahnak, Bgn, C7, Fbln1, Fxyd1, Mgp, Ngfr, Ogn, Olfml3, Pld1, Plekho2, Stab1, Vtn | [41] |
| | VECCHI_GASTRIC_CANCER_ADVANCED_VS_EARLY_UP | 9 (7.8) | 7.818 | Bgn, Gfpt2, Itgbl1, Mgp, Nox4, Pla2g7, Plod2, Slit2, Tmem45a | [42] |
| | SMID_BREAST_CANCER_LUMINAL_B_DN | 13 (11.3) | 7.802 | C7, Ccr2, Col14a1, Fbln1, Gal, Ifi16, Lbp, Mfap4, Mrc1, Padi2, Ptn, Sfrp1, Tmem45a | [37] |
| | SMID_BREAST_CANCER_BASAL_DN | 14 (12.2) | 7.788 | Ahnak, Camk2b, Cilp, Col14a1, Epha3, Fbln1, Gask1b, Itgbl1, Mfap4, Ogn, Olfml3, Pcsk5, Slc6a4, Sparcl1 | [37] |
| | FLORIO_NEOCORTEX_BASAL_RADIAL_GLIA_UP | 11 (9.6) | 7.362 | C1qtnf7, C7, Ccr2, Cela3a, Epha3, Itgbl1, Iyd, Kcnj15, Pcdh18, Slc6a4, Wnt5a | [48] |
| | KIM_GLIS2_TARGETS_UP | 7 (6.1) | 7.219 | Ccr2, Col14a1, Mfap4, Mgp, Ogn, Pdgfrl, Sparcl1 | [49] |
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