A Genomic Snapshot of Antibiotic-ResistantEnterococcus faecalis within Public Hospital Environments in South Africa

Table 1

Summary of the hospital levels, the source of sample collected, sample type, and genotypic characteristics of the E. Faecalis isolates.

Isolate ID	Sample details			Typing	Antibiotic resistance genes (ARGs)
	Hospital	Source	Ward	MLST (15)
1MPA1	Central	PHONE	PEAD	ST40	tetM, mphD, Isa(A)
1MPA3	Central	PHONE	PEAD	ST40	tetM, mphD, Isa(A)
1MPD4	Central	PATIENT FILE	PEAD	ST16	ermB, tetM, mphD, Isa(A), catA, dfrG, dfrK, Str
1MPF1	Central	MOP	PEAD	ST498	mphD, Isa(A)
1MPF3	Central	MOP	PEAD	ST498-LIKE	tetM, mphD, Isa(A)
1MPJ101	Central	OCCUPIED BED	PEAD	ST40	tetM, mphD, Isa(A)
1MPK2	Central	NURSES TABLE	PEAD	ST40	tetM, mphD, Isa(A)
1MPK3	Central	NURSES TABLE	PEAD	ST40	tetM, mphD, Isa(A)
1MPK4	Central	NURSES TABLE	PEAD	ST40	tetM, mphD, Isa(A)
2MPJ104	Central	OCCUPIED BED	PEAD	ST23-LIKE	tetM, mphD, Isa(A)
3MPH1	Central	SINK	PEAD	ST610	ermB, tetM, mphD, Isa(A), tetL
3MPJ101	Central	OCCUPIED BED	PEAD	ST258	mphD, Isa(A)
2UIJ104	Tertiary	OCCUPIED BED	ICU	ST126	tetM, mphD, Isa(A)
2UIK2	Tertiary	NURSES TABLE	ICU	ST126	tetM, mphD, Isa(A)
2UIK3	Tertiary	NURSES TABLE	ICU	ST21	ermB, tetM, mphD, Isa(A)
2UPA3	Tertiary	PHONE	PEAD	ST386-LIKE	mphD, Isa(A)
2UPC4	Tertiary	BP APPARATUS	PEAD	ST386-LIKE	mphD, Isa(A)
2UPF4	Tertiary	MOP	PEAD	ST314	mphD, Isa(A)
2UPJ202	Tertiary	UNOCCUPIED BED	PEAD	ST386-LIKE	mphD, Isa(A)
3UIA2	Tertiary	PHONE	ICU	ST16	tetM, mphD, Isa(A), catA, dfrG, Str
3UIC1	Tertiary	BP APPARATUS	ICU	ST16	ermB, tetM, mphD, Isa(A), catA, dfrG, sat4A, aph3-lll, ant6-la, aac6-Aph2
3UIE2	Tertiary	VENTILATOR	ICU	ST268	tetM, mphD, Isa(A)
3UIJ202	Tertiary	UNOCCUPIED BED	ICU	ST282	ermB, …, mphD, Isa(A), catA, dfrG, sat4A, aph3-lll, ant6-la, tetL
3UPF3	Tertiary	MOP	PEAD	ST16	ermB, tetM, mphD, Isa(A), dfrG
3UPF4	Tertiary	MOP	PEAD	ST16	ermB, tetM, mphD, Isa(A), dfrG
3UPH1	Tertiary	SINK	PEAD	ST23	tetM, mphD, Isa(A)
3UIC2	Tertiary	BP APPARATUS	ICU	ST16	ermB, tetM, mphD, Isa(A), catA, dfrG, sat4A,aAph3-lll, ant6-la, aac6-Aph2
1CIB1	Regional	DRIP STAND	ICU	ST21	ermB, tetM, mphD, Isa(A)
1CID1	Regional	PATIENT FILE	ICU	ST21	ermB, tetM, mphD, Isa(A)
1CIH3	Regional	SINK	ICU	ST21	ermB, tetM, mphD, Isa(A)
1CPK2	Regional	NURSES TABLE	PEAD	ST21	ermB, tetM, mphD, Isa(A)
1CPK3	Regional	NURSES TABLE	PEAD	ST126	tetM, mphD, Isa(A)
2CPF3	Regional	MOP	PEAD	ST41	tetM, mphD, Isa(A)
2CPH2	Regional	NURSES TABLE	PEAD	ST16-LIKE	ermB, tetM, mphD, Isa(A)
3CPH1	Regional	SINK	PEAD	ST23	tetM, mphD, Isa(A)
2SIL2	District	DOOR HANDLE	ICU	ST922	ermB, tetM, mphD, Isa(A),catA, dfrG, dfrK, sat4A, aph3-lll, ant6-la, tetL, fexA, optrA
2SPJ101	District	OCCUPIED BED	ICU	ST6	ermB, tetM, mphD, Isa(A), catA
2SPL2	District	DOOR HANDLE	PEAD	ST314	ermB, tetM, mphD, Isa(A)

PEAD: paediatric ward; ICU: intensive care unit.